Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3542 ATGGATGAATTTGAGTGCTTGAGAGATTGGGATTTGGAGGCTATTGTCAGAGGAAGCAGTGGTGAAGCCACCGCCATGGACGATCCCAATCCTGATTTTTCTTATTTCTTCTCTGACCAAGACGAGCTGCTTGATAGCTTTCCAGAATTCTCAGAAACCACCAGGGTCCTTGATGATCTCGAAGATCTCTACAAACCTTTCTACCCAGTTTTGCACCCTCTTTCACCTCACACCATCGTTACAACTTCCATAGAACCCCAACAGGTCAAAGAACTCAAAGCATCAGAAGAGAAAGTAGCCCTACAGGGTTTCAAAGCCCCCCCAACACCAAAGTGTAAAAAAGGGAAGAAGAACCAGAACAAGAGTGTGGTGAAGCAGGTAACAACAGCAGAAGGTCTTGATGATGCATGGGCATGGCGTAAATATGGACAGAAACCGATAAAGGGTTCTCCGTATCCAAGAAGTTACTATAGGTGCAGCAGTTCGAAAGGGTGTTTGGCGAGGAAACAGGTTGAAAGGAGCCACTTAGATCCTGCTGTTTTTTTGGTTACCTACACTGCTGAACACAGTCATCCTCACCCAACTCGAAGAAACTCTCTTGCTGGGACCACTAGGAAGAACAATTCCTTGATTCCACCTCCAACAACCACACGCAACCACAACACTACTACTTGTTCTTCAAGGACACCTTTGATGGTTCAATCCATTGAAGATAAACTTGTAACGAGTGTGCAACAAAGCATGGACCTCAAGAAAGAAGAACAACATTTTGTTGAGTGGTTCGATGATGGTGCTCAATTTGGTGATGCTTGGATTCCCACCTCAGATCTTGAGAAGTTTATTGGATTTGAATGCCAACATTTTGCACTGGATGGAGCTTTCACCGATGCTTATGCACACTCTTGA 906 0.447 MDEFECLRDWDLEAIVRGSSGEATAMDDPNPDFSYFFSDQDELLDSFPEFSETTRVLDDLEDLYKPFYPVLHPLSPHTIVTTSIEPQQVKELKASEEKVALQGFKAPPTPKCKKGKKNQNKSVVKQVTTAEGLDDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSHLDPAVFLVTYTAEHSHPHPTRRNSLAGTTRKNNSLIPPPTTTRNHNTTTCSSRTPLMVQSIEDKLVTSVQQSMDLKKEEQHFVEWFDDGAQFGDAWIPTSDLEKFIGFECQHFALDGAFTDAYAHS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3542 301 Gene3D WRKY domain 117 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra7g3542 301 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 9 260 IPR044810 GO:0003700
Vra7g3542 301 Pfam WRKY DNA -binding domain 134 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g3542 301 ProSiteProfiles WRKY domain profile. 128 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g3542 301 SUPERFAMILY WRKY DNA-binding domain 127 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra7g3542 301 SMART WRKY_cls 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g3542 301 MobiDBLite consensus disorder prediction 196 223 - -
Vra7g3542 301 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 9 260 - -
Vra7g3542 301 MobiDBLite consensus disorder prediction 190 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3542 Vra-Chr7 54761793 54763095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3542 1 270 WRKY Transcription Factor Family AT4G23550 44.170 6.27e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra7g3542 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3542 K13426 - gmx:102663255 449.899