Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3536 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAACTCATCAGATACATTACAACTCATGGATACGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGGAAGAGTTGTCGTTTGAGATGGATTAATTATTTGAGACCTGATATTAGGAGAGGAAGGTTTACACCTGAGGAGGAAAAGTTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCAGGTAGAACGGACAATGAAATAAAGAACTATTGGAACTCATGGATAAAAAAGAAAATAAGAAAGACTTCACTGTCTTCAACCACTATTGCACAAAGTATCGATCACAATTCTTCCCAGTTCAGCTACAGTTCCAATCTACTTGGCCATTTTTCTACAAACCTGGATAATCCACAGACAAAACAACCACTTCAAGAAACCTTGTTTTCCTCGACGTGCCCTCTGTTCATGTTTGACACACCTTCACTGGAAGGCCCAGCGACAGACTGCAACAGTGTGCGAGCTGAAAATTTTCAAGATGCGGTGGGGTTGAGCACTGAAACGTGGAACCTGAGCCACCATCAGGTTCAGGCACTTCCTCCTCTAACAGTGACTGTGGGCTTGGACACCACAAATTATTTGCCACCATTGATAGAGAACGTGGACAACATGGTCCCGATTGAGGTACAACCTTGTCCCATGGAGGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCAAGGTTTAAATGAATGGGTGGAAACGCAGCAGCAATGTCCTAACTTTCTCTTTTGGGACAGTGTTGAAGGACATATTGGTGGGGAAGAACTAGGCACAAATTCGGCGAATGTGGAAGCAAACACACTTTCTCCTTTTCCTTCTTCTTTGAATTTAGGGTTTATAGACAAGGAGGCAGCAAAGATAACAGTGTGGACGCCCAGCTCTGTTTCTCAGCCTCCAATTCTTCATCATCCACCTTCTCGCACAATGATTATCCCGGAGAAGAACCGTAAGGAGATCTGCAAGTACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATTTGGCGAAGCACCCTGAGATTGACGTGCCTAATCTTCAGGTGATTAAGCTGATGCAGAGTTTCAAATCTCGCGAGTACGTGAGGGAGACCTTTGCTTGGATGCATTACTACTGGTTCCTCACCAACGATGGCATAGAGTTTCTCAGAACTTATCTTAACCTTCCTTCCGAAATTGTCCCTGCCACTTTGAAGAAACAGGCCAAACCACCTGGCAGGCCCTTTGGCGGCCCATCCGGTGATCGCCCTAGGGGTCCACCACGCTTTGACGGCGAGCGTAGATTTGGTGGTGATCGTGATGGGTACCGTGGAGGTCCCCGAGGCGGTGGGGACTTTGGAGGAGACAAGGGAGGAGCTCCTGCTGATTACAGACCCACTTTTGGGGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCGCCAACCAGTTCCAATGTTCCATAA 1578 0.4759 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSLSSTTIAQSIDHNSSQFSYSSNLLGHFSTNLDNPQTKQPLQETLFSSTCPLFMFDTPSLEGPATDCNSVRAENFQDAVGLSTETWNLSHHQVQALPPLTVTVGLDTTNYLPPLIENVDNMVPIEVQPCPMEEQGDIALECLQRQGLNEWVETQQQCPNFLFWDSVEGHIGGEELGTNSANVEANTLSPFPSSLNLGFIDKEAAKITVWTPSSVSQPPILHHPPSRTMIIPEKNRKEICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFDGERRFGGDRDGYRGGPRGGGDFGGDKGGAPADYRPTFGGPGGRPGFGRGSGGFGAPTSSNVP* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3536 525 CDD SANT 69 112 IPR001005 -
Vra7g3536 525 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 266 524 - -
Vra7g3536 525 CDD SANT 17 61 IPR001005 -
Vra7g3536 525 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra7g3536 525 Pfam Plectin/S10 domain 349 440 IPR005326 -
Vra7g3536 525 MobiDBLite consensus disorder prediction 437 525 - -
Vra7g3536 525 Gene3D - 347 450 IPR036388 -
Vra7g3536 525 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra7g3536 525 PANTHER 40S RIBOSOMAL PROTEIN S10 266 524 IPR037447 -
Vra7g3536 525 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra7g3536 525 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vra7g3536 525 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra7g3536 525 Gene3D - 69 138 - -
Vra7g3536 525 MobiDBLite consensus disorder prediction 458 478 - -
Vra7g3536 525 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra7g3536 525 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra7g3536 525 SMART sant 13 63 IPR001005 -
Vra7g3536 525 SMART sant 66 114 IPR001005 -
Vra7g3536 525 Gene3D - 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3536 Vra-Chr7 54683228 54691126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3536 1 297 MYB Transcription Factor Family AT1G63910 52.247 8.57e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g3536 S10_plectin 1.2e-42 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3536 K09422 K02947 gmx:100803556 706.827