Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3535 ATGGCCACAAAAGGGTCAAGCTCTTCTGCTGCTGCTTCAGCTTCTGGGGATGCAAAAATCAAAAGGGTTCTCACACACGGTGGCAAATATGCACAGTACAATGTGTACGGTAACTTGTTCGAGGTGTCTTCCAAGTATGTGCCTCCTATTCGCCCAATTGGTAGAGGCGTTAATGGCATCGTCTGTGCTGCTGTTAATTCCGAAACACACGAACAAGTTGCCATCAAGAAGATTGGTAACGCGTTTGACAATATAATTGATGCTAAGAGGACATTGAGAGAAATCAAACTCCTTCGTCACATGGAACATGAAAATATCATTGGCATCAAGGATATCATACGACCCCCCAAAAGGGAGACCTTCAATGATGTGTACATTGTTTACGAGTTGATGGACACTGATCTTCATCACATAATTCATTCTGACCAACTTCTTGGTGAAGAGCATTGCCAGTACTTCTTATACCAGCTGTTACGGGGGCTGAAATATGTGCACTCAGCTAATGTTTTGCACCGTGACCTTAAGCCCAGTAATTTACTAATGAATGCAAACTGCGACCTTAAAATTGGGGACTTTGGGTTGGCAAGAACAACAACTGAAACAGATTTCATGACAGAGTATGTAGTCACACGATGGTACCGTGCCCCAGAATTGCTCCTTAACTGTTCCGAGTACACCTCTGCAATTGATGTTTGGTCTGTTGGGTGCATACTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGCAAAGACTATGTTCACCAATTAAGGCTTATAACAGAGTTATTAGGTTCACCGGATGATGCAAGCCTAGAATTTCTCCGGAGTGATAATGCCAGAAGATACATTAGACAGCTTCCACAGTACCGGAAGCAAAAATTCTCCGCCAGATTCCCTAACATGTTGCCTGAGGCACTGGACCTGTTAGAGAAGATGCTTATATTTGATCCAAACAAACGCATTACAGTTGATGAGGCACTATGTCACCCTTATCTTTCATCACTTCATAACATCAATGATGAGCCAGTCTGTCCCAGGCCATTCAGTTTTGATTTTGATCAGCCAACGTGCACTGAAGAGCACGTGAAGGAGCTCATTTGGAGGGAATCAGTGAAGTTCAATCCAGATCCACCCTGCCAGTAA 1146 0.4363 MATKGSSSSAAASASGDAKIKRVLTHGGKYAQYNVYGNLFEVSSKYVPPIRPIGRGVNGIVCAAVNSETHEQVAIKKIGNAFDNIIDAKRTLREIKLLRHMEHENIIGIKDIIRPPKRETFNDVYIVYELMDTDLHHIIHSDQLLGEEHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLMNANCDLKIGDFGLARTTTETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLEFLRSDNARRYIRQLPQYRKQKFSARFPNMLPEALDLLEKMLIFDPNKRITVDEALCHPYLSSLHNINDEPVCPRPFSFDFDQPTCTEEHVKELIWRESVKFNPDPPCQ* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3535 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vra7g3535 381 Gene3D Phosphorylase Kinase; domain 1 30 370 - -
Vra7g3535 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 21 380 - -
Vra7g3535 381 CDD STKc_TEY_MAPK 40 376 - -
Vra7g3535 381 SMART serkin_6 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3535 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 21 380 - -
Vra7g3535 381 SUPERFAMILY Protein kinase-like (PK-like) 50 341 IPR011009 -
Vra7g3535 381 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3535 381 ProSitePatterns Protein kinases ATP-binding region signature. 53 77 IPR017441 GO:0005524
Vra7g3535 381 Gene3D Transferase(Phosphotransferase) domain 1 131 360 - -
Vra7g3535 381 Pfam Protein kinase domain 51 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3535 381 ProSitePatterns MAP kinase signature. 82 185 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3535 Vra-Chr7 54677102 54680581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3535 6 376 MAP Kinase Gene Family AT4G01370 80.054 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vra7g3535 Pkinase 6.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3535 - - gmx:100807109 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0263 11 1824758 1827899 Vra7g3535 7 54677102 54680581 PCT