Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3532 ATGATGGCTCGACAATTGTGTGAAGACAAATCCAAGGACATGGTTTCATCAACTGGTCTGTTCTACCCTGATGTGTCATCAAACAGCCCAACTCTCCAACCCCATCTGATGAACCACATCCAAGGCTTTGTGACCGACCCAGAGATGTTCAACCTCACTACTGGCATGGAGATGATAGGGTTTTCCAAGAATCTTCATCCACACAGTGAAAGCAACGGGGTCATGTGGAAAAGTTTTTTCAGCGGAAAAGCAAGTCAACACGCGGGTCCTTCCTCTTCCAAAACTATGAACGAGTCCTCTTGCAATTTTTATAACCAGCACGAGTATAGTAATAAGCAAGACTTCACATCAGGGATTTCTGAAACAAGTAGCGAAAATTTAATAGTCGGTGGTGCCCATGATTCTGCCCCGTGGCAAGAGAACAGGCTAATGCTTGATGATTCTTCCTTAAGGTGCGTGTTCCCTTGTGAAGGTAACGAAAGGCCTAGTCAAGGTCTTTCACTCTCTCTGAGTTCAACCAACCCTTCGAGTATTGGGTTGCAATCTTTCGAGCTAAGACAAACAAACCATCATCAGCATCTTTCTGATTTTGTTTCGAGAGACGGGTATTTTGGAAAATCGGTCAATGCTCAACAACAGCAACAAGTGTTGCAAGACGGGTACATGAGTCCTAACAAAGCTGCAAATATTTATCAGGGACATTTTCTAATAAAGAACTCTAAGTTCTTGGTGCCTGCACAGCTCCTTCTGAACGAGTTTTGTAGTCTGGGAACAAAGGAAAATGATGTGCAAAAGCAGAAGCAGTCTCTAAAGAACAAGACGTGGGAAGAGGGTAACAACGGTGGTGGTTCCTCAAAGAACCATTCTCTTGGGTCTCTAGAGTTCGTGGAGTTGCAGAAGAGAAAGACAAGGCTGCTATCGATGCTGGAAGAGGTTGATAGAAGATACAAACATTACTGTAACCAAATGAAGGCTGTGGTCTCCTCCTTTGAAGCAGTGGCGGGTAACGGAGCAGCCACAGTTTATTCGGCTTTGGCTTTGAGAGCTATGTCTCGCCATTTTAGGTGCCTGAAAGATGGAATCATGGAACAAATTCAAGCGACGAGAAAAGCAATGGGAGAGAAAGATCCCGTTGCACCAGGAACAACAAGGGGCGAAACACCGAGACTTAAAATAATTGATCAATCACTGAGACAACAAAGGGCCTTTCAACAAATTAGCATGATGGAAACTCATCCCTGGAGACCTCAACGTGGCCTTCCTGAACGATCCGTTTCAGTTCTTCGGGCTTGGCTTTTCGAGCACTTTCTTCACCCGTACCCAAGTGATGTCGATAAACACATCCTAGCCCGCCAAACTGGTCTCTCCAGAAGTCAGGTTTCGAATTGGTTTATTAACGCGAGGGTGAGGCTGTGGAAGCCGATGGTGGAGGAGATGTACTTGGAAGAAGAGAAGGAGCAACAGAACGACGTCGCATCGTCGGAGGGAGGAGGCACCAATCCCGAGGGAGATCAGAACGCGGTACGCGAGGATCAGAAGCCGACGCAGGCTCGGCTCCTCCGAATTGACTCGGAGATGTCGTCCATGGTGAGCAACACGGCGCACAAAAACGACACCAAGAGCGGGAAAAGCGTCCAAAACGACGAGCAAATGAATGAGAGCAACCATCCCGCGGAGGCGTTCGGGTCGGTGGAGCTTGACTTTTCGTCATACGCGCAGCACTCCTCCGGCGTGGTTGGTTACGATGGTGACAGCGGGAACGAGAGGTTCCAGGGTGGCGGTGGGGGCGTGTCGTTGACGCTAGGGTTACAGCAGCAGGGTGAAAGCGGGGTGAGTTTAGCGTTCCCGCCAGCGACTCAAAGCTCGATGTTCTACCCACGGGACCAGATAGAAGAGTGTCAAACAGTTGAGTACTCTCTTTTGGACGGCGAAGGACAAAACATGCCGTATAGGAATCTCATGGGGACACAATTGCTCCATGATTTGGTATGA 1992 0.4839 MMARQLCEDKSKDMVSSTGLFYPDVSSNSPTLQPHLMNHIQGFVTDPEMFNLTTGMEMIGFSKNLHPHSESNGVMWKSFFSGKASQHAGPSSSKTMNESSCNFYNQHEYSNKQDFTSGISETSSENLIVGGAHDSAPWQENRLMLDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTNHHQHLSDFVSRDGYFGKSVNAQQQQQVLQDGYMSPNKAANIYQGHFLIKNSKFLVPAQLLLNEFCSLGTKENDVQKQKQSLKNKTWEEGNNGGGSSKNHSLGSLEFVELQKRKTRLLSMLEEVDRRYKHYCNQMKAVVSSFEAVAGNGAATVYSALALRAMSRHFRCLKDGIMEQIQATRKAMGEKDPVAPGTTRGETPRLKIIDQSLRQQRAFQQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEQQNDVASSEGGGTNPEGDQNAVREDQKPTQARLLRIDSEMSSMVSNTAHKNDTKSGKSVQNDEQMNESNHPAEAFGSVELDFSSYAQHSSGVVGYDGDSGNERFQGGGGGVSLTLGLQQQGESGVSLAFPPATQSSMFYPRDQIEECQTVEYSLLDGEGQNMPYRNLMGTQLLHDLV* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3532 663 SMART HOX_1 414 478 IPR001356 GO:0003677
Vra7g3532 663 Pfam Associated with HOX 237 361 IPR006563 -
Vra7g3532 663 Gene3D - 417 479 - -
Vra7g3532 663 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 620 - -
Vra7g3532 663 SMART prehox3 231 363 IPR006563 -
Vra7g3532 663 Pfam Homeobox KN domain 431 470 IPR008422 GO:0003677|GO:0006355
Vra7g3532 663 SUPERFAMILY Homeodomain-like 415 480 IPR009057 -
Vra7g3532 663 CDD homeodomain 414 475 IPR001356 GO:0003677
Vra7g3532 663 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 2 620 - -
Vra7g3532 663 ProSiteProfiles 'Homeobox' domain profile. 411 474 IPR001356 GO:0003677
Vra7g3532 663 MobiDBLite consensus disorder prediction 482 514 - -
Vra7g3532 663 MobiDBLite consensus disorder prediction 265 287 - -
Vra7g3532 663 MobiDBLite consensus disorder prediction 273 287 - -
Vra7g3532 663 MobiDBLite consensus disorder prediction 530 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3532 Vra-Chr7 54633153 54637208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3532 140 663 Homeobox Transcription Factor Family AT5G41410 48.252 6.75e-141 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra7g3532 POX 8e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3532 - - gmx:100792789 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0269 11 1870308 1874311 Vra7g3532 7 54633153 54637208 PCT