Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3530 ATGGGTTTCCCTGTGGGCTACACGGAGCTTCTCTTCCCGAAGCTTCTCCTCCAACTCCTCTCCCTCTTGGGCTTCCTCCGGAGGCTCATTTGCACCGTTCTCCGTTTCATGGGCCTCCACGATTTCCTCGAGCCCGACATTGCTTGGCCCGAAGTCCACACCGGAATGCCAGAATTCGAATCCGTCTCCGCCACGTTTATCCGGGAAATCCTCCCCGTAGTGAAGTTCCGCGACCTCCTCGACCCACCCGAAACCTGCGCCGTCTGTCTCACGGAGTTCGAGAAAAACGATGAGATCAGACGGCTGGCCAACTGTCGACACATATTCCACCGAGGATGTTTGGACCGTTGGATGGGTTACGATCAGAAAACGTGCCCTCTCTGCAGAACACCCTTCATACCAGACGATATGCAAGGTACTTTCATTGAAAGACTCTGGGCTGCGTCTGGGATCTCTGAGCAGCCTCTTTTTCCTGCTTCCTAG 483 0.5507 MGFPVGYTELLFPKLLLQLLSLLGFLRRLICTVLRFMGLHDFLEPDIAWPEVHTGMPEFESVSATFIREILPVVKFRDLLDPPETCAVCLTEFEKNDEIRRLANCRHIFHRGCLDRWMGYDQKTCPLCRTPFIPDDMQGTFIERLWAASGISEQPLFPAS* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3530 160 SUPERFAMILY RING/U-box 67 135 - -
Vra7g3530 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 153 - -
Vra7g3530 160 PANTHER BRH1 RING FINGER PROTEIN 1 153 - -
Vra7g3530 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Vra7g3530 160 SMART ring_2 86 128 IPR001841 -
Vra7g3530 160 Pfam Ring finger domain 85 129 IPR001841 -
Vra7g3530 160 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3530 Vra-Chr7 54600419 54601349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3530 1 160 C3H Transcription Factor Family AT1G63840 56.024 1.03e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3530 K16281 - gmx:100789020 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0270 11 1896354 1897496 Vra7g3530 7 54600419 54601349 PCT