Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3528 ATGTCTTCTGATCTCTACTCTTACGACACCAGTTTCCACACACATTCAAACTCAGACTTTCTCTCCTCTGATGGAGTTGGAGACCTTCCTTTTCTCTCTGACTCTTTTCCTTTCTTCCCCAATTCTCCCTCTAACGTAGCTCAGGACAATTCCAATTCTCTCCCTTCTCTCGACCCTTTTTCCCCATCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGTCTCAGCCTTTACCATGCCAACCGCGTGCAGCCGCTGTCAAATGGCCAAAACTTGGCCAACGAGTTTGGAACTTTCTCAGCTTTTGATGGCTCTGAAGTGAAGACTGAGGAAGCCCAATTGGGTGTTGACTGTGTCTACGCTCAACAACTCCTTCCTCACAGTTACAGTGGTGCTGAAAATTTTTCCAGGTACATGCACAGAAGCTTCAGCAGCAACTCCTTTGAAGCAAAACCAGGTTTTCTGTCACAACCTTACACTGATACTCTTGTGGACTCTCCCAAATTTCAAAGGCATGACTTGAGTTCCCCTGAAGACACTCTCTTCACCGGACAAATGAGAAGGGTTTGTAGCACCGGAGATTTGCAGAACATGAAGGAAAATCGCATGTCTCCAACGGAGGCACCGTTGTTGGAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAAGAGAGAAAAGAAAGAATCTCGAAATACAGAGCCAAGAGAACCCAGAGGAATTTCAACAAGACAATTAAGTATGCATGCCGAAAGACACTAGCAGATAATCGACCACGCATACGTGGCAGATTCGCCCGCAACGACGAAGCCATCGACAATCCCAAGGCTTCATGTTCAACACGAGACGAAGAAGATGTTGATTTCTGGATTGAAGAATTACGATTGCATGAAGAACAAGACGATGTAACAGTGGGAGCAGAGCAATATTTGAGAAGGTATGGAGCAACTCAGTTTCAGTATGGTGGCTTTTGA 981 0.4577 MSSDLYSYDTSFHTHSNSDFLSSDGVGDLPFLSDSFPFFPNSPSNVAQDNSNSLPSLDPFSPSFFSFSPPSSHLESLSLYHANRVQPLSNGQNLANEFGTFSAFDGSEVKTEEAQLGVDCVYAQQLLPHSYSGAENFSRYMHRSFSSNSFEAKPGFLSQPYTDTLVDSPKFQRHDLSSPEDTLFTGQMRRVCSTGDLQNMKENRMSPTEAPLLEESNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEAIDNPKASCSTRDEEDVDFWIEELRLHEEQDDVTVGAEQYLRRYGATQFQYGGF* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3528 326 ProSiteProfiles CCT domain profile. 228 270 IPR010402 GO:0005515
Vra7g3528 326 PANTHER CCT MOTIF FAMILY PROTEIN 9 323 - -
Vra7g3528 326 Pfam CCT motif 228 270 IPR010402 GO:0005515
Vra7g3528 326 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 323 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3528 Vra-Chr7 54577614 54579779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3528 224 272 C2C2-CO-like Transcription Factor Family AT5G57660 53.061 2.50e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra7g3528 CCT 9.5e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3528 - - gmx:102665661 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0272 11 1901993 1904026 Vra7g3528 7 54577614 54579779 PCT