Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3526 ATGGGCGGTTGCTGCTGCTGTTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCTCCTGCCTACTATTATTATCCAAGAGCACCAGAGGAGCATGTTCCTCTATCATCTCACCAGGGTGCCGCTTCTGCTTTCTCTGGGCGACTCTTGGTTGATACTAATCTAGATACGTCATCTCCTGATACTTATAGGCCTCCTCCTGCTCCTATCCCTTTCAATGTTACGTTTGGTACCACTCAAACTCCACCTGCAGCTCAAGAAATTCGTAGTGACAAGAATAATGCACCCTTGCTTTCTACAGATTCTAGTGCAATTCAAGAACCAGTATCTGGAGAAAATCACGGGACCCCAGTTAAGATGGAAGAGCTGAAGGAATCAGAATGCAAAGTTCAGGCTGATCTAGAGATAGATTCTGCTAAGGGTTCTGAAATTGAACTTGCAAAGTCTGGAAAACCTGTAATTTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAAGTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCAACCCTCCCATTGAATAA 639 0.4382 MGGCCCCCSSKETVLSAPPAYYYYPRAPEEHVPLSSHQGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTTQTPPAAQEIRSDKNNAPLLSTDSSAIQEPVSGENHGTPVKMEELKESECKVQADLEIDSAKGSEIELAKSGKPVILVEEEDTCPICLEEYDAENPKLATKCDHHFHLACILEWMERSETCPVCDQDLVFNPPIE* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3526 212 SMART ring_2 161 201 IPR001841 -
Vra7g3526 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 207 IPR013083 -
Vra7g3526 212 MobiDBLite consensus disorder prediction 93 116 - -
Vra7g3526 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Vra7g3526 212 Pfam Ring finger domain 159 201 IPR001841 -
Vra7g3526 212 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 212 - -
Vra7g3526 212 SUPERFAMILY RING/U-box 154 208 - -
Vra7g3526 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 212 - -
Vra7g3526 212 MobiDBLite consensus disorder prediction 93 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3526 Vra-Chr7 54548081 54550989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3526 1 212 C3H Transcription Factor Family AT5G41350 52.558 2.20e-71 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3526 - - vra:106765380 413.69