Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3525 ATGGAAGAATGGTCAACATTCTCAAATGGGCCTTCTTTAGATACCCTTGGAGTTGAAACAGCTGGTGAATTTCCTGGAAATGGTTGTTGTCCTGGAGATGGCCATGTTGATAATGGTGCTCCTCATGGTAAACTTACACAAAAATGCCTGTTCTATCAACTTTACCCTCTTTATCTGAAGGATAATTGTTCCCAAGCTGGTGCTCGGCCTTTGCTGGTTTTGGTTGATGGACAACAGCTCGATTTGTATAAACTCTTCTCCCTTGTGAAGGAAAGGGGTGGATGTGCTGAGGTGTCGAAAAATGGATTGTGGGGTTCTGTGGCCAAGGGATTGGGTTTGAACCTTGAAGTTTACTCGCCGGTGAAATTAGTGTACCATAAGTATCTGAATGATTTTGAAAGGTGGCTGAAGAAGATTTTTGAAGAGAAGATTTTAAAAAATGGGAATCATGGGTGTGATTGGGGTTTGGAGTGGTTGCCATTGGATATAGAGAAAGAGTTCAGAGGCCTGTTATGTCTAAATCCAAAGAACAAAGCCGATGATGAACTTTTCAAGTCAAAATCAAATAAAAAAAAGAAAAACACTGATTTGGTTAACCACAAGAATGGTAATAATCTATTGGACACCAAAGATAAAAATAATGAATCTGAGGATGTCCAACACATTGAAGGTGACAAAAATGAAAAATCCAGTAATGGAATTAAGGACAATCATGCAACCTTGGGTGCAGAATGTGCTGACAAGGAATGTAACCTTCTCAAACGCAAGCGGGATGCATTCTCCGGCATGCTAAACTGGATGAAGGATATTGCAAAACATCCCCTTGATCCTTTAACTCGACCAATACCGAAACCATCAAAGTGGAAGGAGTGTAAAGGCCGTGGCTTTTTTGGTCAATTTCTGAAGGCAAGAGAGGTTCTGTCACTGAGAAATCATGAAGAACCAAACAGTGGATTGTCTTCTTTGCAGAAGCAGAAGATACATCCTGCCATGTTCGAGGATCATGTTGCCCTTGATCGCCATGCTACAGGAAAATCGAGATGCAGTGGAAGGCTGCCTTCGTCTGTTAAATCTCGGTCATGCTCTTGCTGCAATCCATGTTCTCACAATGGAAATACATTGGCAGGTTCACATAATAAGGTGGAAGAAAATTGTCCTCATGAGAAAACAACTGAAACTATAGATGTATTGACTGCAAAGGCAATGGATGAATCATCAGGGGACGAGTCTATTGAAAAGCAAGTATCTGTTGGTCCTCGTTTTCAAGCTGAAATCCCTGAATGGACTGGTGTAGCTTCCGATAGTGACTCTAAATGGCTGGGAACACGAGTATGGTCTTTGAAACATGGCACAGAACCTGCTACTGAAACAGATATTGGAAGGGGAAGACAAGAGAAGTGTAGCTGCGAACGTCAAGGTTCTGTGTCGTGTGTTAGATTACATATAGCTGAAAATAGGATGAAATTGAAGCTTGAATTAGGCTCTGAATTTTACCATTGGGGATTTGATCGAATGGGTGAAGAAGTTTCACTTCAATGGACAACTATAGAAGAAAAGAGATTTAAGGATATCATGAGATCAAATGTTCCCTCTAAAATTAAATATTTTTGGAACAATGGATTCAAATACTTTCCAAACAAGACAAGAAGACACTTGGTGAGCTATTACTTCAATGTGTTTATCATTCAACTAAGAACCTATCAGAACCGGGTGACCCCAGAGAATATTGATAGCGATGATGAAGTAGAGTTTGGCTATTTGAGCAAAGGTTTTGGAATGGAAGCTGTCGAGGGTCTTGTTGATGATGATGATTTCGTGGAGTGTTCTCTGAGCGAGCAGTACATTAATTTTGATTAG 1857 0.405 MEEWSTFSNGPSLDTLGVETAGEFPGNGCCPGDGHVDNGAPHGKLTQKCLFYQLYPLYLKDNCSQAGARPLLVLVDGQQLDLYKLFSLVKERGGCAEVSKNGLWGSVAKGLGLNLEVYSPVKLVYHKYLNDFERWLKKIFEEKILKNGNHGCDWGLEWLPLDIEKEFRGLLCLNPKNKADDELFKSKSNKKKKNTDLVNHKNGNNLLDTKDKNNESEDVQHIEGDKNEKSSNGIKDNHATLGAECADKECNLLKRKRDAFSGMLNWMKDIAKHPLDPLTRPIPKPSKWKECKGRGFFGQFLKAREVLSLRNHEEPNSGLSSLQKQKIHPAMFEDHVALDRHATGKSRCSGRLPSSVKSRSCSCCNPCSHNGNTLAGSHNKVEENCPHEKTTETIDVLTAKAMDESSGDESIEKQVSVGPRFQAEIPEWTGVASDSDSKWLGTRVWSLKHGTEPATETDIGRGRQEKCSCERQGSVSCVRLHIAENRMKLKLELGSEFYHWGFDRMGEEVSLQWTTIEEKRFKDIMRSNVPSKIKYFWNNGFKYFPNKTRRHLVSYYFNVFIIQLRTYQNRVTPENIDSDDEVEFGYLSKGFGMEAVEGLVDDDDFVECSLSEQYINFD* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3525 618 MobiDBLite consensus disorder prediction 183 198 - -
Vra7g3525 618 Pfam ARID/BRIGHT DNA binding domain 59 133 IPR001606 GO:0003677
Vra7g3525 618 ProSiteProfiles ARID domain profile. 45 137 IPR001606 GO:0003677
Vra7g3525 618 MobiDBLite consensus disorder prediction 205 233 - -
Vra7g3525 618 SMART bright_3 46 138 IPR001606 GO:0003677
Vra7g3525 618 MobiDBLite consensus disorder prediction 183 234 - -
Vra7g3525 618 SMART ELM2_2 415 464 IPR000949 -
Vra7g3525 618 SMART ARID_2 42 133 - -
Vra7g3525 618 SUPERFAMILY ARID-like 47 138 IPR036431 GO:0003677
Vra7g3525 618 ProSiteProfiles ELM2 domain profile. 413 459 IPR000949 -
Vra7g3525 618 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 617 - -
Vra7g3525 618 Gene3D - 40 147 IPR036431 GO:0003677
Vra7g3525 618 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 617 - -
Vra7g3525 618 CDD ARID 51 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3525 Vra-Chr7 54535943 54542547 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vra7g3525 ARID 4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3525 - - gmx:100819320 978.778