Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3517 ATGCGGTCGTGGTGGGGAAAGTCTTCTTCCAAAGAGGTGAAAAGGAAGGAAAACAAGGAAAGTATTATTCACACCATACAGCGGAAATTAAAGAATGCTTCTGAAGAGAAATGCAATAACAAATCTGAAAGATCAAGGAGACATCGTGATGATGCCATCTCCAAAAAAGGATCTAGATCTCTTGCACCTTCAAGATCACCATCACCCTCTACACATGTATCCCGATGTCAAAGTTTTGCAGAAAGGCCTCTCTCTCAACCACTTCCATTACCTGGGTCACATCTTTCGGATGCCATTGGTGCAAATTCTGGGGTTATTTTAACATCAAAACTTGATAGAACCATAAACTCAAAGCCATCTCTATATTTTCCCCTTCCAGTACCTGGTTTTGTTTCAAACAAGGAAGATGCTACTTATATGGAAGGAGAAATAGCCACTGCATCTGTTTCTAGTGAAAGCTCAATTGATAGTGGCAACTCATTTGATTCGCCGCATTTTGTTAGCCCTCTGGCTTCTGATTGTGAAAATGGAAACCGAGCAACCATTAATAGTTCTTTCAGTCTGGTGCACAAGAACCAACCACTTATTACTATACAAAGAAACTCAAGAGCATTCTCAAAACCAAGTCCTCAGTTGTGCAATAATAAGCCATTGTCTACCTCACCAAGAGGGGTTCCATTACATCTGCAAAATCTGCAAGTGGCTCGCCCAGGTGGTTTGTGTAGTGCTCCAGGTAGTTCAATATCAAGTCCTAGAAATCCGACGGGAACATTTGGTCCTGAACAAATGTTCAACTCTGAATTACAGACAAGAAAGCCTTATCCAGATATAGCTTCTGGGCACTCCTATAGTCTGGTTTCAGGCCGTAATTCTAGCCATATTTCAGTTGGTGGGGATCTTTCGGGACAGATGATTTTGCCTCAAAACAGGTGTAGCCCTGAGTGTTCTCCAATAGTTAGTCCCAGAATGACAAGCCCCGGTCCCAGTTCCAGGATACAGAGTGTTACTGTGACCCCTCTGCATCCCAAAGCCGGAGGAACTGCAGCAGAAGCACATACACGACGCCTTGACGATATGAAACAAAAAAATCATCAGTTACCACTTCCTCCAATATCAGTTACTAAGCCGTGTCCATTTTCTCCACCCTATTCTGCATCAACAACTCCTTCAGCCCCTCGTAGTCCTGCCGGATCAGAAACTTCGATAAGCCCAGGTTCGCGCTGGAAAAAAGGGCAGTTGCTTGGAAGGGGAACATTTGGACATGTATATCTTGGTTTTAACAGAGAAAGTGGTGAGATGTGTGCGATGAAGGAGGTAACCCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAAGAAATTGCAATGCTTAGTCGGTTGCGGCATCCAAATATTGTTCAGTATTATGGATCTGAGACGATCGATGACAGACTTTATGTATACTTGGAGTATGTCTCCGGTGGGTCAATCTATAAGCTGGTTAAGGAATATGGCCAGTTAGGTGAAATTGCAATTCGCAATTATACTCGACAAATTTTGTTAGGACTCGCATATTTACACGCCAAGAACACTGTTCACAGGGACATTAAAGGAGCAAACATATTGGTGGACCCTAATGGGCGGATAAAATTGGCAGATTTTGGGATGGCAAAGCATATAAGTGGGCCATCTTGTCCATTTTCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGGTTATAAAAAATTCAAATGGTTGTAATCTTGCGGTTGATATATGGAGTCTGGGATGCACTGTTTTGGAGATGGCGACAACAAAACCTCCTTGGAGCCAATATGAAGGGGTTGCTGCTATGTTTAAGATTGGGAACAGCAAGGAACTTCCGACAATTCCAGATCATCTTTCAGAAGATGGAAAAGATTTTGTAAGGCTTTGTTTGCAAAGGAATCCTCAAAATCGTCCCTCGGCTGCTCAACTTCTAGAGCATTCATTTGTTAGAAATGCTATGCTGGAAAGATCTATTTTATCTGCCGCTCCTTCAGAAGATCCTACTGCTATAATAAATGCAGTGAGATCTCTGGTCGTTGGACCTGCAAAACGTAATTCATGCTTAGACTCAGAAGTAGCCGGGATGAATCCGCCTAGAAACTTGAAAGCGGGTTCTGGATCAAGTGATCCTCATACACCTAGAGAGATCTCTTGTCCCATCTCTCCCTCTTTTCCTTATAAATCATTGCATACAAGTGGAAGGATGTCGCCTCCAATATCTAGCCCTCGTACTGCATCAGGCTCATCTTCGCCTCTAACCAGTGGCGGCGGTGCTATTCCATATCATCAGACAAAACAATCAATAATCTCCCACGAAGTTTCGGGGATGATACAAAGGTCCCATCATGGTGTTATTCCAATATCTAGCCCTCGTACTGCATCTGGCTCATCTTCGCCCTTAACCAGTGGCGGCGGTGCTATTCCATATCATCAGACAAAGCAATCAATGCTCTCTCCTGAAGTTTCGGGTATGATCCAAAAGTCCAATCATGGTGTTATTCCAATATCTAGCCCTCGTACTGCATCTGGCCCATCTTCACCACTAACCAGTGGCGGTGGTGCAATTCCATTCCATCAGTCAAAGCAACAACTATTCTCACATGAAGTTGTGGGTATGAGCCAAAAGTCTCAGAATGGTGCCATTCCAGTTTCTAGCCCTCGTACTGCATCTAGCTCTTCTTCACCACTAACCAGCGGTGGAGGCGCTGTTCCAGTTCATCAGACAAAGCAACCACTATTCTCACACGAAGTTTTGAGTATGATCCAAAAGTCTCAGAATGGTGCTATTCCAATATCTGGCCCTCATACTGCATCTGGCACATATTCGCCACTAACCAGCGGTGGAGGCGCTGTTCCATTTCATCAGACAAAGCAACCACTATTTTCACATGAAGTTTCCGGTATGATTCAAAGGTCTCAGAATGGTTGTATTCCAATATCTAGCCCTCCAACTCCATCCGGCTCATCTTCGCCACTAACCTGTGGGGGAGGAGCTATTCCGTTTCATCAGACAAAGCAGCCACTGTTCTCACATGAAGTTGTGGGTATGACTCAAAAGTCTCAGAATGGTGCCATTCCAATATCTAGCCCTCGTACTGCATCTGGCTCATCTTCACCACTGACCAGTGGCGGCGGTGCTATTCCATTTCATCAGACAAGGCCACAACTATTCTCAAATGAACTTGTGGGTATGATCCAAAAGTCTCTGGATGGTGCTATTCCAACAGCTAGCCATCGTACTGCATCTGGCTCATCTTCACCACTGACCAGTGGCGGCGGTGCTATTCCATTTCATCAGACAAGGCCACAACTATTCTCAAATGAACTTGTGGGTATGATCCAAAAGTCTCTGGATGGTGCTATTCCAACAGCTAGCCATCGTACTGCATCTGGCTCATCGCCTCTGACCAGTGGTGGCAGTGCTATTCCATGTCTTCAGACCAGGCAATCACAAATATCGCATGAAGTTGTTGGCATGAGCCAAAATCCTCAGCATGGTTTTCATTCATTTGGAAATACCCCTCATCAGGGTTCTAAGCATGCGCAGTTTGGGAGAAACTTGCAAACTACACATGCTTGCCGGGATGTAGGTTCATCTAACAATAACCATTCTAGGAGGGCTGTCCAGGGAGACCCAATAGAATTTCGCGATGGGAAATCATATTTGGCTGATTGCGTGTCACAACAGCTGTTGAGGGATTATGTACGGCTACATGCATGCCTGGATCTTAAACCCGATCCCCCAAATCCTGATCGCACAAATGGCTTATGA 3816 0.4468 MRSWWGKSSSKEVKRKENKESIIHTIQRKLKNASEEKCNNKSERSRRHRDDAISKKGSRSLAPSRSPSPSTHVSRCQSFAERPLSQPLPLPGSHLSDAIGANSGVILTSKLDRTINSKPSLYFPLPVPGFVSNKEDATYMEGEIATASVSSESSIDSGNSFDSPHFVSPLASDCENGNRATINSSFSLVHKNQPLITIQRNSRAFSKPSPQLCNNKPLSTSPRGVPLHLQNLQVARPGGLCSAPGSSISSPRNPTGTFGPEQMFNSELQTRKPYPDIASGHSYSLVSGRNSSHISVGGDLSGQMILPQNRCSPECSPIVSPRMTSPGPSSRIQSVTVTPLHPKAGGTAAEAHTRRLDDMKQKNHQLPLPPISVTKPCPFSPPYSASTTPSAPRSPAGSETSISPGSRWKKGQLLGRGTFGHVYLGFNRESGEMCAMKEVTLFSDDAKSRESAQQLGQEIAMLSRLRHPNIVQYYGSETIDDRLYVYLEYVSGGSIYKLVKEYGQLGEIAIRNYTRQILLGLAYLHAKNTVHRDIKGANILVDPNGRIKLADFGMAKHISGPSCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSEDGKDFVRLCLQRNPQNRPSAAQLLEHSFVRNAMLERSILSAAPSEDPTAIINAVRSLVVGPAKRNSCLDSEVAGMNPPRNLKAGSGSSDPHTPREISCPISPSFPYKSLHTSGRMSPPISSPRTASGSSSPLTSGGGAIPYHQTKQSIISHEVSGMIQRSHHGVIPISSPRTASGSSSPLTSGGGAIPYHQTKQSMLSPEVSGMIQKSNHGVIPISSPRTASGPSSPLTSGGGAIPFHQSKQQLFSHEVVGMSQKSQNGAIPVSSPRTASSSSSPLTSGGGAVPVHQTKQPLFSHEVLSMIQKSQNGAIPISGPHTASGTYSPLTSGGGAVPFHQTKQPLFSHEVSGMIQRSQNGCIPISSPPTPSGSSSPLTCGGGAIPFHQTKQPLFSHEVVGMTQKSQNGAIPISSPRTASGSSSPLTSGGGAIPFHQTRPQLFSNELVGMIQKSLDGAIPTASHRTASGSSSPLTSGGGAIPFHQTRPQLFSNELVGMIQKSLDGAIPTASHRTASGSSPLTSGGSAIPCLQTRQSQISHEVVGMSQNPQHGFHSFGNTPHQGSKHAQFGRNLQTTHACRDVGSSNNNHSRRAVQGDPIEFRDGKSYLADCVSQQLLRDYVRLHACLDLKPDPPNPDRTNGL* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3517 1271 MobiDBLite consensus disorder prediction 851 871 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 364 409 - -
Vra7g3517 1271 Pfam Protein kinase domain 409 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3517 1271 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 787 - -
Vra7g3517 1271 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 990 1026 - -
Vra7g3517 1271 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1039 1074 - -
Vra7g3517 1271 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 799 835 - -
Vra7g3517 1271 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 847 882 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 887 919 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 7 56 - -
Vra7g3517 1271 SUPERFAMILY Protein kinase-like (PK-like) 406 665 IPR011009 -
Vra7g3517 1271 Gene3D Transferase(Phosphotransferase) domain 1 406 688 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 800 824 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 59 78 - -
Vra7g3517 1271 ProSitePatterns Protein kinases ATP-binding region signature. 414 437 IPR017441 GO:0005524
Vra7g3517 1271 MobiDBLite consensus disorder prediction 1037 1066 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 371 385 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 1037 1060 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 739 775 - -
Vra7g3517 1271 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 799 835 - -
Vra7g3517 1271 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1039 1074 - -
Vra7g3517 1271 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 847 882 - -
Vra7g3517 1271 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 787 - -
Vra7g3517 1271 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 990 1026 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 386 407 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 1 78 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 887 921 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 319 337 - -
Vra7g3517 1271 Coils Coil 16 36 - -
Vra7g3517 1271 CDD STKc_MEKK1_plant 407 664 - -
Vra7g3517 1271 SMART serkin_6 408 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3517 1271 ProSiteProfiles Protein kinase domain profile. 408 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3517 1271 MobiDBLite consensus disorder prediction 319 351 - -
Vra7g3517 1271 MobiDBLite consensus disorder prediction 705 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3517 Vra-Chr7 54438670 54447488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3517 4 787 MAP Kinase Kinase Kinase AT1G63700 61.452 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra7g3517 Pkinase 2.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3517 K20717 - gmx:100814422 1491.86