Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3502 ATGAGAACTAGCAACCAAAGTCCTTTCACTTTCCCTGTCTTTCATAGTTTTGACTGTTTGGAATCCCTGCGCTTGCTGAGGGAGGCACCGTTAAAGTTGATTGACCAGAACTGCTCTGATTTGCTGCTGACAGAAAGGGTTGGGATGGGTTGTGACTTTTCTAAGTACACAGCATGCTGCATGGATACAGAGGAGGATGGTCATCCAGCTCCTGAGGATCAGGTTGACGGTGAAAACGAAGACAATGCTGTTGAGGGCATTGAGTTGCCACGGTTTCATGAATTCACCATTGATCAGCTTAGGAGGGCTACATCAGGATTTGCTGTTGAAAATATTGTTTCTGAGCATGGAGAAAAAGCTCCAAATGTGGTCTATAAAGGGAGACTTGATAATCAAATGCGAATTGCAGTCAAACGGTTCAACAGAAATGCTTGGCCTGAAGCGCAGCCATTTTTGGAGGAGGCCAGGGCTGTTGGTCAGCTGAGGAACCAACGACTGGTAAATCTGCTTGGATGTTGCTGTGAAGGTGACGAGAGGTTACTCGTTGCAGAATATATGCCCAATGATACTTTGGCAAAACATTTATTCCATTGGGAAAATCAGCCCATGCGATGGGCAATGCGAATGAGAGTTGCATTGTTCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTAAATGCCTACAGAGTGCTTTACGATGATGACTACAATCCTAGACTTTCATGCTTTGGTTTGATGAAAAATAGTCGAGATGGAAAAAGTTATAGTACGAATTTGGCGTTTACTCCACCTGAATATCTCAGGACAGGCAGAGTAACTCCAGAGAGTGTAACTTACAGCTTTGGCACACTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATGCCCTTGACCTAATTAGAGACAAGAACCTGCAGACGCTATCAGACTCTTGCTTAGAAGGGGAGCTTACAAATGATGATGGGATTGAATTAGTGCGTCTGGCCTCACTGTGTTTGCAATCTGAACCACGAGAGCGTCCTAATCCAAAGTCACTGGTTGCTGCTCTAATACCTCTACAGAAGGATTCTGAGGCTCCTTCTCATGTACTGATGGGTATACCAGATGGTGCAGCTACTTTTCCCCTTACACCTCTAGGAGAAGCTTGTCTACGAATGGATCTTACTGCCCTGCATGAGGTGATGGAGAAAATGGGGTATAAAGACGATGAGGGTGCAGCAACTGAGCTTTCATTCCAAATGTGGACGAACCAGATGCAGGAAACGTTGGACTCAAAGAAGAAAGGGGATGCTGCTTTTCGGCTTAAGGATTTTAAAACGGCAATTGATGGCTATACGCAGTTCATTGATGTTGGAACAATGGTTTCTCCAACGGTTTATGCACGTCGTAGTTTATGTTATCTTATGAGCAACATGGCTGATGAAGCACTTAATGATGCAATGCAAGCCCAAGTAATATCACCCGTTTGGTATATTGCGTTTTATTTACAAGCTGTTGCACTTTTAGCAATGGGCAAGGAGAATGATGCTCAAATGGCACTTAAAGAAGGTTCCTTGCTTGAAAGTAAAAGGAGCACAAATTAA 1617 0.4409 MRTSNQSPFTFPVFHSFDCLESLRLLREAPLKLIDQNCSDLLLTERVGMGCDFSKYTACCMDTEEDGHPAPEDQVDGENEDNAVEGIELPRFHEFTIDQLRRATSGFAVENIVSEHGEKAPNVVYKGRLDNQMRIAVKRFNRNAWPEAQPFLEEARAVGQLRNQRLVNLLGCCCEGDERLLVAEYMPNDTLAKHLFHWENQPMRWAMRMRVALFLAQALEYCTSKGRALYHDLNAYRVLYDDDYNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDKNLQTLSDSCLEGELTNDDGIELVRLASLCLQSEPRERPNPKSLVAALIPLQKDSEAPSHVLMGIPDGAATFPLTPLGEACLRMDLTALHEVMEKMGYKDDEGAATELSFQMWTNQMQETLDSKKKGDAAFRLKDFKTAIDGYTQFIDVGTMVSPTVYARRSLCYLMSNMADEALNDAMQAQVISPVWYIAFYLQAVALLAMGKENDAQMALKEGSLLESKRSTN* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3502 538 PANTHER TPR DOMAIN KINASE 49 538 - -
Vra7g3502 538 ProSiteProfiles Protein kinase domain profile. 110 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3502 538 SUPERFAMILY Protein kinase-like (PK-like) 87 369 IPR011009 -
Vra7g3502 538 Gene3D Tetratricopeptide repeat domain 420 532 IPR011990 GO:0005515
Vra7g3502 538 SUPERFAMILY TPR-like 437 528 IPR011990 GO:0005515
Vra7g3502 538 Gene3D Phosphorylase Kinase; domain 1 82 185 - -
Vra7g3502 538 Gene3D Transferase(Phosphotransferase) domain 1 187 378 - -
Vra7g3502 538 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 49 538 IPR045845 GO:0004672|GO:0009742
Vra7g3502 538 Pfam Protein tyrosine and serine/threonine kinase 123 360 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3502 Vra-Chr7 54309341 54320666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3502 68 386 Glycoside Hydrolase AT3G07070 32.286 4.50e-40 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vra7g3502 PK_Tyr_Ser-Thr 7.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3502 K14500 - gmx:100819210 914.064