Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3501 ATGGATGGGAGAGAGGTTATGTCATTTTCTGGTGGCTCAGCTTCATATTACATGCATAGAGGAGGGGTTGGAGGGTCTGGTTCTGGAACGCTTAGTGGGGGAGGGGAGTTCCAAGCTGCCCCTGGGTTCAGACCTTTGTCAAACCCTGGCATTCAAGCTGAGCCAAATTCAAGGGGTCAGGGAGGTGGTTCTGTAGGGTCTAGCTCCATATTTTCTGTGGAGCCTCCTCACGGTCGTGCCAATTTTAACCATGACATTGGCATTGGCAGTGGGGCACCTTCAAGTGAGCCTGTTAAGAAGAAAAGAGGGAGACCCCGTAAATATGGTCCTGATGGAACAGTTTCTTTAAGATTGTCTCCAATGTCTGCCCCCGCTAACTCCACCCAGGGTGAAAGTGCAACCACCCTTTCTCAGAAAAAGGGAAGAGGGCGCCCACCTGGATCTGGAAGGAAGCAACAACTAGCTGCATTAGGTGAATGGATGAATAGTTCAGCAGGCTTGGCCTTTTCACCTCATGTTGTCACTATAGGAGTTGGGGAGGACATTGTGGCAAAGTTATTATTGTTATCTCAACAGAGGCCAAGGGCTCTTTGTGTTTTGTCAGGCACTGGGACAGTTTCTTCAGTCACTCTACGACAGCCTGCTTCTACCAATGCCAGTATAACTTTTGAGGGACGATTCCAAATACTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGTCCTGATGGTCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCTGGAAGCCCAGTGCAGGTCGTATTGTGCAGTTTTGTGTATGGTGGCTCAAAGACCAAGCCTAAACAAGGGCTCACTATCACAAATGAAAGTGGTGAGCACCCTCAGCATAATGACAAGATGGCTACTCCAGCCAGTGCTCCACCTGGTCATAATAATCAAAACTACCTCCCTTCTGGGGCACACATTTGGCCTGGATCTCAACCGGCAGAGCTGAAAAACACGCAAACCCACACTGGCATTGACTTGACTCGTGGCTGA 1074 0.4879 MDGREVMSFSGGSASYYMHRGGVGGSGSGTLSGGGEFQAAPGFRPLSNPGIQAEPNSRGQGGGSVGSSSIFSVEPPHGRANFNHDIGIGSGAPSSEPVKKKRGRPRKYGPDGTVSLRLSPMSAPANSTQGESATTLSQKKGRGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTIGVGEDIVAKLLLLSQQRPRALCVLSGTGTVSSVTLRQPASTNASITFEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQVVLCSFVYGGSKTKPKQGLTITNESGEHPQHNDKMATPASAPPGHNNQNYLPSGAHIWPGSQPAELKNTQTHTGIDLTRG* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3501 357 MobiDBLite consensus disorder prediction 318 332 - -
Vra7g3501 357 MobiDBLite consensus disorder prediction 340 357 - -
Vra7g3501 357 ProSiteProfiles PPC domain profile profile. 163 305 IPR005175 -
Vra7g3501 357 CDD DUF296 171 283 IPR005175 -
Vra7g3501 357 MobiDBLite consensus disorder prediction 19 153 - -
Vra7g3501 357 MobiDBLite consensus disorder prediction 291 357 - -
Vra7g3501 357 MobiDBLite consensus disorder prediction 50 71 - -
Vra7g3501 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 171 284 IPR005175 -
Vra7g3501 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 289 - -
Vra7g3501 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 357 IPR039605 GO:0003680
Vra7g3501 357 MobiDBLite consensus disorder prediction 119 141 - -
Vra7g3501 357 Gene3D - 171 305 - -
Vra7g3501 357 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3501 Vra-Chr7 54301422 54306142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3501 1 357 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.096 3.44e-100 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3501 - - gmx:100813888 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0282 11 2006991 2011145 Vra7g3501 7 54301422 54306142 PCT