Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3496 ATGGGAAGTAAATTTTTAGCGTTAGCTTGCTTGCGGAAGAATGAGGGTTCGGGTAACCTTTCGCCTCGTTCTCACTATCCATCGATGCCGAGATATCCGAAAGGTGTGACGGAAGAAGAAGGAAGCAACGGCGTTTTGCTGAAAGCGGTTTTCTCAGTCACCGGAATGACTTGTTCCGCCTGCGCTGCTTCCGTCGAGAAAGCCGTCAAACGTCTTCCCGGAATTCGCCAAGCTGTCGTCGATGTTCTCAACAATCGTGCACAAGTCCTCTTCTATCCATCCTTTGTCAATGAAGAGAGCATTCGCGAGGCCATTGAAGATGCTGGATTCCAAGCCGCATTAATCAGAGAAGATAACGAGACATCTATTCAGATATGCCGCATACGTATCCAAGGCATGACATGCACGTCGTGTTCCTCCACTGTGGAATCTGCACTTCAAGCAATCCAAGGAGTGGTGAAAGCTCGAGTGGCCCTTGCAACTGAGGAAGCTGAAGTTCACTACACTCCAAACGTTGTCACCTACAACCAAATCTTGGAAGGAGTAGAAAACACTGGTTTTCAAGCCACNCTTATCAGCACGGGTGAAGACATGAGCAGAATAGACCTTCAGGTTGAGGGAGTAAGGACGGGTCGTTCCATGAGAATAATTGAAAGTTCTCTTCAAGCACTTCCTGGGGTCGAAGATGTAGANACACACCCTTTGTTGAACAAAGTGTCTCTTTCTTATAAACCAGACTTGACAGGACCAAGAAATTTCATTAACGTGATTCAGGAAACCGGGTCTAGGCGTTTCAAGGCAAAGATTTTCCCGGGAGAAGGAGGGAAAAGGAATAGTCATAGGAGGGAGGAAATCAAGCAATACCATAGANCCTTCTTGTGGAGTTTGGTGTTTACNATTCCTGTGTTTCTAACTTCCATGGTGTTTATGTATATCCCTGGAATCAAGCATGGACTAGATGCCAAAGTTGTTAAAATGCTCACAGTGGGGGAGATCATAAGATGGGTGCTTTCTACACCAGTGCAGTTTGTTATAGGGAGGAGATTTTACTCTGGTGCTTACAAAGCATTACGCCTTGGCTCTCCCAACATGGATGTTTTGATTGCCCTGGGGACAAATACAGCGTACTTTTACTCANTGTATTCTGTGCTGAGAGCTGCTACATCTGATGGTTTCAAGGGNACTGATTTCTTTGAGACCAGTGCTATGCTTATTTCGTTTATTTTGCTAGGGAAGTACCTTGAGGTTTTGGCCAAGGGGAAGACATCCGATGCAATTGCNAAGCTCATGAACTTGACACCTGACACTGCTATATTGTTGACGTTGGATAGTGAAGGAAATGTTGTTGGTGAGGAGGAAATTGATAGCAGGTTGATTCAGAAGAATGATGTTATTAAGATCATTCCCGGTGCAAAAGTGGCTTCCGATGGATTGGTCATTTGGGGTCAGAGCCACGTGAATGAGAGCATGATAACAGGTGAGGCACGTCCTGTGGCAAAGAGGAAAGGGGATACTGTTATTGGAGGAACTGTGAATGAAAATGGAGTNTTGCACATTAAGGCTACATGGGTGGGATCAGAGAGTGCCCTTGCTCAGATTGTNAGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCCAAATACTTTGTGCCCATGGTTATTTTAATGTCATTTTCAACTTGGCTTGCCTGGTTTATAGCTGGAAAAGTTCGTGCTTACCCCAAGTCCTGGATACCATCTTCCATGGATAGCTTTCAGCTTGCTTTGCAGTTCGGGATTTCTGTCATGGTCATAGCCTGTCCATGTGCTTTAGGTTTAGCAACACCGACTGCAGTCATGGTTGGCACTGGAGTAGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCATTAGAAAATGCACATAAGGTGAACTGCGTTGTATTTGACAAGACAGGTACTCTCACTATCGGGAAGCCTGTGGTAGTAAATACAAAGTTGTTTACAAATATGGTACTCCGAGAATTCTATGAACTTGTGGCAGCAGCTGAGGTGAATAGTGAGCATCCACTGGCTAAGGCTGTTGTAGAGTATGCTAAAAGACTGAGAGATGAAGAGAACCCCATTTGGCCAGAGGCACGGGATTTTGTGTCGATTGCTGGACATGGAGTTAAGGCCATGGTTAGAAATAAGGAAATACTTGTGGGTAACAAGACCTTGATGGTGGACCACAATGTTGCACTTCCTGTTGATGCTGAAGAGATACTAGCAGAAGCGGAAGCAATGGCTCAAACTGGAATTATAGTGTCCATAAACAGGGAAGTTGTTGGGGTTTTAGCAGTATCTGATCCATTGAAACCAGCTGCACAAGAAGTTATTTCCATTCTCAAGTCCATGAAAGTCAGGAGCATCATGGTGACTGGGGACAATTGGGGAACTGCCAATTCTATAGCAAAGGAAGTTGGAATTGAAACTGTTATTGCTGAAGCTAAACCTGAGCAGAAGGCTGAGCAAGTGAAGGACTTGCAGGCTTCTGGGCACAAGGTGGCTATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGGATGGCAATTGGTGCTGGTACAGACATTGCTATTGAAGCTGCTGATATTGTCCTGATGAAGAGCAATTTGGAGGATGTCATAACTGCCATTGATCTTTCCAGAAAAACGTTTTCTCGTATCCGTCTCAACTACATATGGGCTTTGGGCTATAATCTGCTTGGAATTCCAATTGCTGCTGGAGCTCTTTTTCCCTCTACACGATTTCGGTTGCCACCGTGGGTTGCCGGGGCTGCCATGGCTGCATCTTCTGTCAGTGTAGTTTGCTGTTCTTTACTGTTGAAGTATTATAGGAGACCNAAGAAGTTGAACAATCTTGAGATACGGGGCATAAGCATTGAGTGA 2955 0.4521 MGSKFLALACLRKNEGSGNLSPRSHYPSMPRYPKGVTEEEGSNGVLLKAVFSVTGMTCSACAASVEKAVKRLPGIRQAVVDVLNNRAQVLFYPSFVNEESIREAIEDAGFQAALIREDNETSIQICRIRIQGMTCTSCSSTVESALQAIQGVVKARVALATEEAEVHYTPNVVTYNQILEGVENTGFQATLISTGEDMSRIDLQVEGVRTGRSMRIIESSLQALPGVEDVXTHPLLNKVSLSYKPDLTGPRNFINVIQETGSRRFKAKIFPGEGGKRNSHRREEIKQYHRXFLWSLVFTIPVFLTSMVFMYIPGIKHGLDAKVVKMLTVGEIIRWVLSTPVQFVIGRRFYSGAYKALRLGSPNMDVLIALGTNTAYFYSXYSVLRAATSDGFKGTDFFETSAMLISFILLGKYLEVLAKGKTSDAIAKLMNLTPDTAILLTLDSEGNVVGEEEIDSRLIQKNDVIKIIPGAKVASDGLVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHIKATWVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPMVILMSFSTWLAWFIAGKVRAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGILIKGGQALENAHKVNCVVFDKTGTLTIGKPVVVNTKLFTNMVLREFYELVAAAEVNSEHPLAKAVVEYAKRLRDEENPIWPEARDFVSIAGHGVKAMVRNKEILVGNKTLMVDHNVALPVDAEEILAEAEAMAQTGIIVSINREVVGVLAVSDPLKPAAQEVISILKSMKVRSIMVTGDNWGTANSIAKEVGIETVIAEAKPEQKAEQVKDLQASGHKVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSTRFRLPPWVAGAAMAASSVSVVCCSLLLKYYRRPKKLNNLEIRGISIE* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3496 984 TIGRFAM TIGR00003: copper ion binding protein 49 112 IPR006122 GO:0005507
Vra7g3496 984 TIGRFAM TIGR00003: copper ion binding protein 128 189 IPR006122 GO:0005507
Vra7g3496 984 Gene3D - 198 270 - -
Vra7g3496 984 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 364 964 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vra7g3496 984 Pfam Heavy-metal-associated domain 50 110 IPR006121 GO:0046872
Vra7g3496 984 Pfam Heavy-metal-associated domain 128 187 IPR006121 GO:0046872
Vra7g3496 984 Gene3D - 736 786 IPR023299 GO:0000166
Vra7g3496 984 Gene3D - 658 735 IPR023299 GO:0000166
Vra7g3496 984 Gene3D - 618 912 IPR023214 -
Vra7g3496 984 SFLD C1.7: P-type atpase like 633 907 - -
Vra7g3496 984 Gene3D - 46 115 - -
Vra7g3496 984 Gene3D - 124 196 - -
Vra7g3496 984 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Vra7g3496 984 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Vra7g3496 984 PRINTS P-type cation-transporting ATPase superfamily signature 780 791 - -
Vra7g3496 984 PRINTS P-type cation-transporting ATPase superfamily signature 802 812 - -
Vra7g3496 984 PRINTS P-type cation-transporting ATPase superfamily signature 855 874 - -
Vra7g3496 984 PRINTS P-type cation-transporting ATPase superfamily signature 878 890 - -
Vra7g3496 984 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Vra7g3496 984 SFLD p-type atpase 633 907 IPR044492 -
Vra7g3496 984 SUPERFAMILY HAD-like 650 961 IPR036412 -
Vra7g3496 984 Gene3D - 419 541 - -
Vra7g3496 984 ProSitePatterns Heavy-metal-associated domain. 130 159 IPR017969 GO:0046872
Vra7g3496 984 SUPERFAMILY Calcium ATPase, transmembrane domain M 396 930 IPR023298 -
Vra7g3496 984 ProSiteProfiles Heavy-metal-associated domain profile. 200 261 IPR006121 GO:0046872
Vra7g3496 984 CDD HMA 50 113 IPR006121 GO:0046872
Vra7g3496 984 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Vra7g3496 984 ProSiteProfiles Heavy-metal-associated domain profile. 48 114 IPR006121 GO:0046872
Vra7g3496 984 CDD P-type_ATPase_Cu-like 290 965 - -
Vra7g3496 984 SUPERFAMILY HMA, heavy metal-associated domain 122 195 IPR036163 GO:0046872
Vra7g3496 984 Pfam E1-E2 ATPase 450 629 - -
Vra7g3496 984 CDD HMA 128 190 IPR006121 GO:0046872
Vra7g3496 984 SUPERFAMILY HMA, heavy metal-associated domain 47 118 IPR036163 GO:0046872
Vra7g3496 984 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Vra7g3496 984 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Vra7g3496 984 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Vra7g3496 984 PRINTS Copper-transporting ATPase 1 signature 148 169 - -
Vra7g3496 984 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Vra7g3496 984 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 5 975 - -
Vra7g3496 984 Pfam haloacid dehalogenase-like hydrolase 647 869 - -
Vra7g3496 984 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 404 936 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g3496 984 SUPERFAMILY HMA, heavy metal-associated domain 194 262 IPR036163 GO:0046872
Vra7g3496 984 PANTHER ATP7, ISOFORM B 5 975 - -
Vra7g3496 984 SUPERFAMILY Calcium ATPase, transduction domain A 451 537 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3496 Vra-Chr7 54280002 54288767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3496 1 984 Primary Pumps ATPases AT1G63440 75.227 0.0 1520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3496 K17686 - gmx:100810141 1768.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0288 11 2042334 2046541 Vra7g3496 7 54280002 54288767 PCT