Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3484 ATGGAAGAAACTGGGATGCAACTTGGAAAAGAAGTGAACGAAGGCACCTCAAACACTGTTAAAGAACGTTCCATTTCTCCACTTGATCTAGGTTTGTTCGACATATGGAATCGATTTCGTAGTTTCTTAGTGATTTTGTCCAAAAAGGTCAAAAAGAAAGGACGTGGCACAGTATGGTCGCCCTGTGACGACCAACTGAACCAGAACTACAAGGCCAAGTTCTTGTGCAGCTACGGCGGCAAGATCCAGCCCCGAACCCATGACAACCAACTCTCCTACGTCGGCGGCGACACTAAGATCCTCGCCGTCGACCGCTCCATCAAGTTCCCCGCTTTCCTTTCCAAGCTCGCGGCTCTCTGCGACACCACGCCGCAGGATCTCACCTTCAAGTACCAACTCCCTGGCGAAGACCTCGACCCCCTAATCTCCGTCACCAATGACGGCGACCTGGAACACATGATGCACGAGTACTACCGTCTCTATCGCCCTAACTCCAAACCTGTTAGGATGAGACTCTTTCTCTTCACGCTTTCCTCAAACCATAATTCCTCGTTCTCCTTGGATCGTGATCGCTTCGTTGATGCTCTTAACTCTGCTCCAATTCCTCTACAACCTGACCCCATCAAAACCCCTCCCGTTACTCCTTCCAATGTTGATTACCTCTTCGGTCTCGACAAGGTCGTTGTTCCTCCCACTCTCCCTCCTTCCTTCGCGGCCGTCAAGTTCCACGATCACGCGCCCGAGCCAGTCGCGCCGCAGCCGGAGTATCAGGTTCGCAGTGGAATCTCCATTTCTGATCGCGTCGTTGGATCGGATCCGAGTGTGAACTCGATCTTGATTCAGAGACAAATACAGCAGGAGATGCAGCGTTTGCCGATTGCTGAGAATGAATATCGGAGGAGGAGTGAGGATGGTTTAACCGGTGGCTATGCCACTGCGGGAGGTGATTATTACATGCAGAAGATGCCGGGGAAGGTTCGACCTGCTAATGCGCCCCATTCCAGTGGGTACTGGCAGGAGAAGCAGTTTTCCGGCGAGAGTTTTCAGACGATAGTCACGACGGCTCCCGGAGTTCCCCCTATTACTAGATCGGATACAAAGGATTCAATTGACAGAGATGCTGTGCTTGCAAGGGTTGAATCAGAGAAAAGAGTTGCTTTAATCAAAGCCTGGGAAGAAAGTGAAAAAACAAAAGCAGAAAACAGAGCATATAAAAGGCACAATGCTGTTGTGTTGTGGGAGAACAGTAAGAAAGCATCAGCGGAGGCACATTTGAAGAGAATCGAGGAAAAATTGGACAGAAACAAGGCGAAGTGTGTGGAGAAGATGCAAAATAAAGTTGCTGAAATTCACCGAACAGCAGAGGAGAAAAGGGCAATGATAGAAGCTTACAAGGGAGAAGAATTTCTAGAAATAGAGGAGAAAGCTGCAAAGTTTCGAACTCGTGGGTATTCTCCCAGGAAATTTCTTCCATGCTTTGGCAGTTAA 1488 0.4913 MEETGMQLGKEVNEGTSNTVKERSISPLDLGLFDIWNRFRSFLVILSKKVKKKGRGTVWSPCDDQLNQNYKAKFLCSYGGKIQPRTHDNQLSYVGGDTKILAVDRSIKFPAFLSKLAALCDTTPQDLTFKYQLPGEDLDPLISVTNDGDLEHMMHEYYRLYRPNSKPVRMRLFLFTLSSNHNSSFSLDRDRFVDALNSAPIPLQPDPIKTPPVTPSNVDYLFGLDKVVVPPTLPPSFAAVKFHDHAPEPVAPQPEYQVRSGISISDRVVGSDPSVNSILIQRQIQQEMQRLPIAENEYRRRSEDGLTGGYATAGGDYYMQKMPGKVRPANAPHSSGYWQEKQFSGESFQTIVTTAPGVPPITRSDTKDSIDRDAVLARVESEKRVALIKAWEESEKTKAENRAYKRHNAVVLWENSKKASAEAHLKRIEEKLDRNKAKCVEKMQNKVAEIHRTAEEKRAMIEAYKGEEFLEIEEKAAKFRTRGYSPRKFLPCFGS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3484 495 Pfam PB1 domain 87 175 IPR000270 GO:0005515
Vra7g3484 495 Gene3D - 92 176 - -
Vra7g3484 495 CDD PB1_UP2 75 175 - -
Vra7g3484 495 Coils Coil 418 460 - -
Vra7g3484 495 Pfam Remorin, C-terminal region 383 488 IPR005516 -
Vra7g3484 495 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 65 356 - -
Vra7g3484 495 SMART PB1_new 86 177 IPR000270 GO:0005515
Vra7g3484 495 PANTHER OS05G0427100 PROTEIN-RELATED 65 356 - -
Vra7g3484 495 SUPERFAMILY CAD & PB1 domains 87 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3484 Vra-Chr7 54159235 54163574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3484 70 198 MAP Kinase Kinase Kinase AT5G57610 41.912 1.29e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3484 - - vra:106767655 992.26