Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra7g3483 | ATGGCTTTCAGCGGTACCCAACAGAAGTGCAAGGCTTGCGATAAAGTTGTTCACTTCGTCGAAAGCTTATCTGCCGATGGGATCTCTTATCACAAAAACTGCTTCAGATGCAGCCATTGCAATGGCCTTCTCGCGATAAGCAACTACTGCTCCGGAGATGGAATTTTATACTGCAGGGTGCATTATGAGCAGCTTTTCAAGGAGACTGGCTCCTACCCCAAGAAAGTCAATTCCTCTCCAAAGCCACCAAACGAGCTGAATAGGACACCAAGCAAAATTTCTACCTTCTTCTCTGGGACTCAAGAAAAATGCACCAAATGCAAGAAAACAGTCTACCCGTTGGAAAAGTTGACAGTGGAAGGTGAGTTTTACCACAAATCATGCTTCAGGTGCGCTCACGGAGGGTGTTTCCTGACTCCTTCAACCTATGCTGCTCTTGATGGGTACCTATACTGCAAGCCACACTTCTCTCAGTTGTTCAAGGAGAAGGGCAGCTACAGTTATCTGTCCAAGCAAGCTTCATTGAAGAGAAGTGAAATGCTACAAGAGCAAGAGGCTGCGGCTGCGCAGAATCAGAAGACTGATGGTAATCGCTCAGAGTCGGAAGCAGAAACAGAAACAGAGACAAAAGCAGAGACAGAAAAAGCAGAGACAGAGACAAACGAAGCAGAACAAGGTGACGAGGAACCAAACTCTGACAAAGAGTAG | 708 | 0.4647 | MAFSGTQQKCKACDKVVHFVESLSADGISYHKNCFRCSHCNGLLAISNYCSGDGILYCRVHYEQLFKETGSYPKKVNSSPKPPNELNRTPSKISTFFSGTQEKCTKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQASLKRSEMLQEQEAAAAQNQKTDGNRSESEAETETETKAETEKAETETNEAEQGDEEPNSDKE* | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra7g3483 | 235 | ProSiteProfiles | LIM domain profile. | 102 | 162 | IPR001781 | - | |
| Vra7g3483 | 235 | MobiDBLite | consensus disorder prediction | 197 | 220 | - | - | |
| Vra7g3483 | 235 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Vra7g3483 | 235 | Pfam | LIM domain | 104 | 159 | IPR001781 | - | |
| Vra7g3483 | 235 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 75 | - | - | |
| Vra7g3483 | 235 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Vra7g3483 | 235 | SMART | lim_4 | 103 | 155 | IPR001781 | - | |
| Vra7g3483 | 235 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Vra7g3483 | 235 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 96 | 129 | - | - | |
| Vra7g3483 | 235 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 130 | 168 | - | - | |
| Vra7g3483 | 235 | MobiDBLite | consensus disorder prediction | 179 | 235 | - | - | |
| Vra7g3483 | 235 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Vra7g3483 | 235 | MobiDBLite | consensus disorder prediction | 179 | 196 | - | - | |
| Vra7g3483 | 235 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Vra7g3483 | 235 | Gene3D | Cysteine Rich Protein | 98 | 168 | - | - | |
| Vra7g3483 | 235 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Vra7g3483 | 235 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 214 | - | - | |
| Vra7g3483 | 235 | PANTHER | OS06G0237300 PROTEIN | 1 | 214 | IPR045268 | GO:0051015 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra7g3483 | Vra-Chr7 | 54157036 | 54158930 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Vra7g3483 | LIM | 5.1e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra7g3483 | - | K09377 | vun:114179495 | 384.03 |