Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3480 ATGTGGGCTTGGATGCTTGGTGAAGGGCGTAGGGCGGTGTGCGAGGTGGCGTGCACCTACAACTGGGTGGCGCTCCGACACATGGGTGGCGGTCCGAGAACCTTTCCAGGCGGCGTGAACAAGTGGAAGTGGAAGCGCATGCACGAGAAACGCGCAGAAGACAAACAAAAGAGACTCATCGAGCAAGAGAAGCAGCTCTACGAGGCTCGCATTCGCTCCCACATCCGTTCCACCCTCTCCCCCGACCACCACTCTGCCGCCGCCGCCACCCATCGCCCTTTATCCCCTAACGACCACGTCAAAGCCCTTGCGGACCGCTTCGTCAAAGAAGGCGCCCAAGATCTCTGGAACACTAACGACGGTCCCCTGACTCCAAACCCGACACCAAACCCAACACCGAACCCAACACCGACCCCAAACCTTAATTTTGGCCCCAAACATTCTAGGGCCTACCGTTCGGTTCCCGAGGTTAGGAACAACCGTGTCGGGGCCCACAAGTATAGGTTTTGGCGGAAAGGTAGTGACGATTCTTCTTCCGGCGAGAGCGAGAGTGAGAATGAGAATGAATTGAGTTTGAAGACGGGTAGTAGTGCTTCTTTGGGGGAGTATGATGTGAAGAGAGAGAAGAGGGTGGTGCCTAAGAAATCTGAAGAAGTTGAGTTTATTAGACATGAACTTATTAAGCGGAAGTTGAGACAGATTGAGGAGCAAGAGAGTGAGAAACAACACAACTATGAAAGTATTCTAAGTAACACAAGATTTGATGAGTGCGGTATATCACCGCAAACTGTCAAGGCACTTTCTTCAGCTGGTTATGTTCATATGACACGGGTACAAGAGGCTAGCCTCTCGATTTGCCTTGAGGGCCTGGATGCTTTAGTCAAATCTAAAACTGGCACCGGAAAAAGTGTAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAGTACATCTCAACGGGTCCCCCCAATATATGTTCTTATTCTCTGCCCTACAAGAGAACTTGCTAGTCAAATTGCCGCTGTAGCGAAAGTTTTGCTGAAATATCAAGATGGCATTGGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTTGACCAAAAGCGCCTGGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTCTGCGATTAATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTCGACCTGGGATTTAGAAAGGATGTAGAAAAAATTGTGGATTGTTTGCCCCGTCAAAGGCAATCTTTACTGTTTTCTGCAACCATACCAAAGGAGGTACGTCGCATATCCCAGCTTGTTTTGAAAAGGGAACACAAGTATGTTGATACAGTTGGAATGGGTTGCGTAGAAACTCCTGTTAAGGTGAAGCAATCTTATCTCGTTGCTCCTCATGAGTCACATTTTCAATTAGTGCATCAGATTCTGAAGGAGCATATCTTGCAAACGCCTGATTATAAGGTTATTGTATTCTGTATAACTGGAATGGTGACCTCACTCATGTATAACCTTCTTCGGGAAATGAAAATGAATGTGAAGGAGATGCATTCTCGAAAACCTCAGCTCTATCGTACTCGTATATCAGATGAGTTCAAGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCACGGGGAATGAATTATCCTGATGTCACCTTAGTCATACAGGTGGGAATTCCTTCTGACCGTGAACAATACATACACCGCCTTGGAAGAACAGGTCGAGAAGACAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAAAGTACTTTTTAGAAGAAATTAAGGATCTACCTCTACAGGAATTTCCCTTACCTGACATACATCCACAGACAAAACTTAAGATTGAGAATTCGATGGCAAAGATTGATAATGACATCAAAGAAGCTGCTTATCATGCTTGGCTTGGTTATTACAACTCTATCAGGGAAATTGGGAGGGAAAAGACCACTGTAGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCTATAAAAATGGGTTTGAAAGACATTCCTGGTATTAGAATTCGTAAATAG 2166 0.4548 MWAWMLGEGRRAVCEVACTYNWVALRHMGGGPRTFPGGVNKWKWKRMHEKRAEDKQKRLIEQEKQLYEARIRSHIRSTLSPDHHSAAAATHRPLSPNDHVKALADRFVKEGAQDLWNTNDGPLTPNPTPNPTPNPTPTPNLNFGPKHSRAYRSVPEVRNNRVGAHKYRFWRKGSDDSSSGESESENENELSLKTGSSASLGEYDVKREKRVVPKKSEEVEFIRHELIKRKLRQIEEQESEKQHNYESILSNTRFDECGISPQTVKALSSAGYVHMTRVQEASLSICLEGLDALVKSKTGTGKSVAFLLPAIETVLKAMSSSTSQRVPPIYVLILCPTRELASQIAAVAKVLLKYQDGIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLQMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYVDTVGMGCVETPVKVKQSYLVAPHESHFQLVHQILKEHILQTPDYKVIVFCITGMVTSLMYNLLREMKMNVKEMHSRKPQLYRTRISDEFKESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREDKEGEGILLIAPWEKYFLEEIKDLPLQEFPLPDIHPQTKLKIENSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTVAELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRK* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3480 721 SMART helicmild6 524 605 IPR001650 -
Vra7g3480 721 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 252 280 IPR014014 GO:0003724
Vra7g3480 721 Coils Coil 45 65 - -
Vra7g3480 721 MobiDBLite consensus disorder prediction 124 140 - -
Vra7g3480 721 CDD SF2_C_DEAD 481 614 - -
Vra7g3480 721 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 500 650 IPR001650 -
Vra7g3480 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 624 IPR027417 -
Vra7g3480 721 MobiDBLite consensus disorder prediction 115 158 - -
Vra7g3480 721 Pfam Helicase conserved C-terminal domain 500 603 IPR001650 -
Vra7g3480 721 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 283 466 IPR014001 -
Vra7g3480 721 PANTHER RNA HELICASE 31 126 - -
Vra7g3480 721 PANTHER RNA HELICASE 225 720 - -
Vra7g3480 721 Pfam DEAD/DEAH box helicase 276 454 IPR011545 GO:0003676|GO:0005524
Vra7g3480 721 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 225 720 - -
Vra7g3480 721 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 31 126 - -
Vra7g3480 721 Gene3D - 476 701 IPR027417 -
Vra7g3480 721 MobiDBLite consensus disorder prediction 171 195 - -
Vra7g3480 721 Gene3D - 217 467 IPR027417 -
Vra7g3480 721 SMART ultradead3 271 482 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3480 Vra-Chr7 54140945 54144983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3480 235 634 Eukaryotic Initiation Factors Gene Family AT1G72730 27.981 3.09e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3480 - - gmx:100808520 1234.94