Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3476 ATGCCTCTGGGAACCCTTGAAGTTTTTCTTGAATATGCCAAAGGCCTTGAGAACACAGATTTTCTCTCTAACATGGACCCTTATGTCATCCTCACATGTCGCACCCAAGAACAAAAAAGTAGTGTTCAATCAGGTAAAGGAAGTAATCCAAAGTGGAATGAAAATTTCATATTCAAGGTTTCTGAAGGCGTTAACGAACTGAGATTAAAGATCATGGACAGTGATAACATGTCTACGGATGATTTTGTGGGAGAAGTTACCATTACGTTGGAGGACTTGTTCAAGGAAGGGAGCATTCCACCAACTTCATACAATGTTGTGAAGGATGACCGTTATTGTGGGGAGATTAGAGTTGGCCTCATTTTTAAGCGTCAGGAACGCAGGGAACGCGGCATGGAGGAAGATTTTGGGGGATGGAAGGAGTCCAATTGCATATTCTAA 441 0.4218 MPLGTLEVFLEYAKGLENTDFLSNMDPYVILTCRTQEQKSSVQSGKGSNPKWNENFIFKVSEGVNELRLKIMDSDNMSTDDFVGEVTITLEDLFKEGSIPPTSYNVVKDDRYCGEIRVGLIFKRQERRERGMEEDFGGWKESNCIF* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3476 146 Gene3D C2 domain 2 124 IPR035892 -
Vra7g3476 146 SMART C2_3c 5 102 IPR000008 -
Vra7g3476 146 PANTHER OS02G0640000 PROTEIN 3 142 - -
Vra7g3476 146 Pfam C2 domain 4 97 IPR000008 -
Vra7g3476 146 PANTHER C2 DOMAIN-CONTAINING 3 142 - -
Vra7g3476 146 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vra7g3476 146 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 123 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3476 Vra-Chr7 54116542 54118505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3476 3 126 C2H2 Transcription Factor Family AT4G21160 29.032 7.23e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3476 - - gmx:100806391 212.616