Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3469 ATGGACTGGAATCTGAAAGCAGCTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAGTGGAAGGCTCAAGCAGATATGGAATGTTTACAAGTAAGGGGGAATTTTCAGTTGACTTGAAGCTTGGTCAGGTGGGGAATTCTGGCACAGAATCAGTGTTGACCAAGTCCAAAGATGCTGTAGGACTCTCCAAAATCACATCCTCATCTTCATCTTCTGGCTCATCTAAGAGAGCTCGTGCCCTTGGCAACGCCACACAGACAGTGTCGTGTCTTGTCGATGGCTGCCACTCTGATCTCAGTAACTGCAGGGACTATCACAGGCGCCATAAGGTCTGCGAAGTTCATTCCAAAACTGCACAAGTCACAATCGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGCTAGATGGGCACAACAGACGGAGAAGAAAGCCCCAAGCAGAACCTCCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAGGTACCCAGTTGCTACCTTTCTCAAGTTCACATGTATACCCATCGACTACCGTGATGAATCCCACATGGGGTGGCATTGTTGCTTCTGGTGATGTTAGGATTCATGGACACAACCAACAGGGTGAGCTTTTTCTCGGAACTTCTCCAACCGGTTATAAAGAAGGGAAACAATTGGCCTTCCTGCAAGCTGATCAAACTCTCAACAACCAAAGCCCACATCTCGCCGGTGCTTACGTGGGCCAGGCCCATATGTTTATGAGGAGCGGCCCGTATTCTGAAAGTAGTGGGCTGAGGTGTAAAATGTTGTGCGATAGCCTAACGAGCTCGGTCCACGACTCCTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTGAGCCAAATAGTGAACCCGCATTCGCCCCTTATGCAGCCATTGGGCCTGAGCCTTCATGATGGTAACAGCTTGGGGCCCGTGGACCCGGTTTTGGGCCTGAATGGGAGTGACCATTCTTCGTCGATGTATAATATAGGTTCTAATGGATCGCAGGGGAACGAAGCCCCTCCGGTGTTTCCCTTTCAATGGGGATAG 1155 0.5004 MDWNLKAASWDLSEVDQANLPNMETVEGSSRYGMFTSKGEFSVDLKLGQVGNSGTESVLTKSKDAVGLSKITSSSSSSGSSKRARALGNATQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEPPLTRSGSFLSNYQGTQLLPFSSSHVYPSTTVMNPTWGGIVASGDVRIHGHNQQGELFLGTSPTGYKEGKQLAFLQADQTLNNQSPHLAGAYVGQAHMFMRSGPYSESSGLRCKMLCDSLTSSVHDSSSRALSLLSSPQPHSPGNGLSQIVNPHSPLMQPLGLSLHDGNSLGPVDPVLGLNGSDHSSSMYNIGSNGSQGNEAPPVFPFQWG* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3469 384 SUPERFAMILY SBT domain 94 173 IPR036893 GO:0003677|GO:0005634
Vra7g3469 384 Pfam SBP domain 96 169 IPR004333 GO:0003677
Vra7g3469 384 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 383 - -
Vra7g3469 384 MobiDBLite consensus disorder prediction 160 182 - -
Vra7g3469 384 ProSiteProfiles Zinc finger SBP-type profile. 93 170 IPR004333 GO:0003677
Vra7g3469 384 MobiDBLite consensus disorder prediction 365 384 - -
Vra7g3469 384 Gene3D - 87 157 IPR036893 GO:0003677|GO:0005634
Vra7g3469 384 MobiDBLite consensus disorder prediction 304 326 - -
Vra7g3469 384 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 383 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3469 Vra-Chr7 54071822 54075340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3469 1 383 SBP-box Gene Family AT5G50670 43.921 8.25e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra7g3469 SBP 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3469 - - gmx:100805328 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3469 7 54071822 54075340 Vra5g0655 5 10225983 10230246 PCT