Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3463 ATGTCAGACTCACGGGCCCCTAAGCGCCCCAAAATAACTAGGGGGGACGATGATTATATGCCGGGAAATATTCTTGAGATCGAGCTTTGTAATTTCATGACGTTTGACTATTTAAAATGCAAACCTGGGCCTCGACTGAATCTTGTAATTGGACCCAATGGCTCTGGTAAGAGTTCGCTTGTATGTGCTATTGCTCTTGGCCTGTGTGGAGAGCCCCAGTTGCTTGGGCGTGCTACAAGTATTGGGGCATATGTGAAGCGTGGAGAAGAATCTGGCTACATTAAGATCACCTTGAGAGGGGACCATAGAAATGAACACATTAGCGTTATGCGGAAAATTAGTACTAATAACAAGTCTGAATGGTTGCTCAATGGAAGTGTGGTATCTAAAAAGGATGTGGCTGAAACCATTCAAAGGTTTAACATACAAGTCAATAATTTGACCCAGTTTTTACCACAAGACAGGGTCTGTGAGTTTGCCAAGTTAACTCCTATTCAACTTCTGGAAGAGACGGAAAAGGCTGTTGGTGACCCACAACTCCCAGAGCAACACCGAACACTAGTTGATAAAAGCCGTTCATTGAAACATATTGAGTTGTCTCTGGAGAGAAATGAAGGAACCTTAAAACAGTTGAAGGAACGAAATGCTGAATTAGAGACAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTCTTGCCAAGGCTGAATCAATGAAAAAGAAGTTGCCATGGCTGAAGTATGATATGAAGCAGGCAGAATACCGGGAGGTTAAGGAGCGTGAGAATGATGCAGCAAAGGCATTGGAGGAAGCTGCAAAGTTACTAAATGATCTTAAAGAACCTATCATGAAACAAAAAGAAGAGAAAGCTTCATTAGATGCAAAATGCAAAAGGGTTAGTCGCATTGTAAATGAGAATGCAAAGAAGAGAATTGAGCTTATGGAGGAGGAGCATAAATTGGATGTGGAATTACAAGGAAAATACAAAGAAATGGAAGAATTGAGGAGACAAGAAGAAACACGACAACAAAAACTTGTAAAAGCAAGGGAGGAACTTGCTATTGCTGAAGATGAACTTGAAAACTTACCCTCTTATGTACCTCCCAAGGATGAGCTTCAAAGACTAAAAGCCGAAATCGGTGAATTGGATTATGCTGCTAATCAAGTGAGGCAGAACAAGTCACAAGCAGAGAATGAAATAAAGCGCAAGAAGTCATTCATGATGCAAAATAAAGAGAGGTTGATGGAAATGGATAATAAAAGTACGAAGTGTTTGCATGTATTGCAAAGGTCAGGGGCTGAAAAAATTTTTGAAGCTTATAAATGGGTCCAAGAACATCAACATGAATTCAATAAGGAGGTTTATGGCCCAGTCTTAGTAGAGGTGAATGTATCAAATAAAGTTCATGCCGCATATCTAGAGGGTCAAGTGGCTCACTACACTTGGAAGTCCTTCATAACACAAGATTCTGGTGATCGAGATCTTTTGGTGAAGCACCTGCAGTTCTTTGATGTACCAGTTTTAAATTATACAGGTGATGGTGGCCACCAAAGAGAGCCTTTTGAAATTTCCGAAGATAAACGTGCTCTTGGCATATACTCTCGGCTGGATCAAATTTTTGATGCTCCTATTGCCGTGAAGGAGGTTTTGATTAGCCAGTTTAATCTAGATCATTCATATATCGGATCCAAAGAAACTGACCAGAACGCTGATGAGGTACCAAGATTAGGAATTGTAAATTTGTGGACACCTGAAAATCACTACCGTTGGTCCAAGTCTAGATATGGAAATCATGTCTCTACAGTCGTTGAACAAGTGGAACGCCCACAACTTTTATTGAATAATTTGAATGTTGGTGAAATTGAAAAGCTGCGTTCTCAGCAAAAGGAGCTTGAAGAAGTCGTTGCTAATTTGGAGGAATGTGTTAAAAAGTTTCAAGATGAAGAAAGAAGCTTAGTGAATCAAGCTGCTAATCTTCGTAAGGAGTGGGAAGGCATTAGTATTACAGTACAGAATGAGCGTAAAAAACGTCAAACACTCATTAGCCGTATTGATCAGAGGAAAGGGTTATTAAAAGTGATGGAGGAACGGGATGATTTAGATACTGAGATAGCAAAGCTTGTTCATCAGGCTTCCAAGTATAACATTCAGCGTTTTCGTAATGCAATGGAAATTAAGGATCTTCTTGTTGAAGCTGTGAGTTACAGACGAACTTTTATTGAACAACGTATGGCTTTTATTGAGTTTGATGCAAAGACTGGAGAAATGGATGCCAACTTGAAGCAGCATGAGAATGTTGCTGTGCAAGCATCATTGCACTTCGAAAACTGTAAGAAAGAATCTGAGAACTGTAGACAGAAGCTTACAGATTCCTTGAAGTATGCTAAATCAATTGCTCAGCTTACACCTGAGCTAAAGAAGGAATTTCTCGAGATGCCTACTACAATTGAGGAACTGGAGGCAGCTATCCAGGATACCACCGCTCAAGCCAATTCAATTCTCTTTGTCAATCATAACATATTGGAACAATATAAAGATCGTCAATGGCAGATAGAAGATCTTGCAGCAAAACTGGAAGCAGACAGACAGGAATCTACACGGTGTTTGGCTGAGTTAAATGACATTAAGGGAAAATGGCTTCCTACATTGAGAAACCTAGTGGCAAAAATAAATGAAACCTTCAGTTTCAATTTCCAAGAGATGGCCGTTGCTGGAGAAGTTTCGCTAGATGAGCATGATAAAGATTTTGATCAATTTGGAATACTGATAAAAGTTAAATTCAGAGAAAATGGACAGCTTAAAGTTTTGAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTGACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGATCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAGCAAGCAAGCCCAATACCCCCCAGTGTTTCTTACTTACCCCAAAATTGTTACCAGATCTGCAATATAGTGAGGCATGTAGTATATTGAATGTGATGAATGGCCCTTGGATTGAAGAACCCTCGAAGGTCTGGACTACTGGTGATCGATGGAGTATTATCACTGGACTAGTTGGAAACACACTTTGCTAA 3159 0.4011 MSDSRAPKRPKITRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGYIKITLRGDHRNEHISVMRKISTNNKSEWLLNGSVVSKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPIQLLEETEKAVGDPQLPEQHRTLVDKSRSLKHIELSLERNEGTLKQLKERNAELETDVERVRQRDELLAKAESMKKKLPWLKYDMKQAEYREVKERENDAAKALEEAAKLLNDLKEPIMKQKEEKASLDAKCKRVSRIVNENAKKRIELMEEEHKLDVELQGKYKEMEELRRQEETRQQKLVKAREELAIAEDELENLPSYVPPKDELQRLKAEIGELDYAANQVRQNKSQAENEIKRKKSFMMQNKERLMEMDNKSTKCLHVLQRSGAEKIFEAYKWVQEHQHEFNKEVYGPVLVEVNVSNKVHAAYLEGQVAHYTWKSFITQDSGDRDLLVKHLQFFDVPVLNYTGDGGHQREPFEISEDKRALGIYSRLDQIFDAPIAVKEVLISQFNLDHSYIGSKETDQNADEVPRLGIVNLWTPENHYRWSKSRYGNHVSTVVEQVERPQLLLNNLNVGEIEKLRSQQKELEEVVANLEECVKKFQDEERSLVNQAANLRKEWEGISITVQNERKKRQTLISRIDQRKGLLKVMEERDDLDTEIAKLVHQASKYNIQRFRNAMEIKDLLVEAVSYRRTFIEQRMAFIEFDAKTGEMDANLKQHENVAVQASLHFENCKKESENCRQKLTDSLKYAKSIAQLTPELKKEFLEMPTTIEELEAAIQDTTAQANSILFVNHNILEQYKDRQWQIEDLAAKLEADRQESTRCLAELNDIKGKWLPTLRNLVAKINETFSFNFQEMAVAGEVSLDEHDKDFDQFGILIKVKFRENGQLKVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEEPSKVWTTGDRWSIITGLVGNTLC* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3463 1052 Gene3D - 847 1022 IPR027417 -
Vra7g3463 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 1047 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Vra7g3463 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 288 IPR027417 -
Vra7g3463 1052 CDD ABC_SMC5_euk 925 1027 - -
Vra7g3463 1052 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Vra7g3463 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 1003 IPR027417 -
Vra7g3463 1052 Coils Coil 372 399 - -
Vra7g3463 1052 Coils Coil 194 228 - -
Vra7g3463 1052 Coils Coil 251 278 - -
Vra7g3463 1052 Gene3D - 23 226 IPR027417 -
Vra7g3463 1052 Coils Coil 621 662 - -
Vra7g3463 1052 CDD ABC_SMC5_euk 22 179 - -
Vra7g3463 1052 Coils Coil 841 861 - -
Vra7g3463 1052 Coils Coil 328 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3463 Vra-Chr7 53981936 54006433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3463 1 1041 Structural Maintenance of Chromosomes family AT5G15920 62.344 0.0 1308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3463 K22803 - gmx:100778678 1840.47