Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3445 ATGGAAAAGCTGAATTTTGTTAAAAATGGAGTGAGCAAATTGCCTCCTGGTTTTCGTTTTCAGCCAACTGATGAAGAGCTTGTTTTCCAATACCTCAAGTGTAAGGTCTTCTCCTATCCCTTGCCTGCTTCTATCATTCCTGAGATCAATGTCTGCAAGCATGATCCTTGGGATTTACCTGGGAATTGTGATCCTCAAGAGAGGTATTTTTTCAGTCCAAAGGAAGCAAAGTATAGAAATGGTAATCGCATGAACAGAACAACAAAGTGTGGATATTGGAAGGCAACAGGGTCAGACAAGAGAATTTCATCATCTTCAAATGCATGCAATGGCATTGTGGGAATAAGAAAAACACTGATTTTTTATGAAGGAAAATCTCCAAAAGGGTCCAGAACTGACTGGGTCTTGCATGAATATCGTCTTGCTAATGCAGAAACTGCTGCTTGCAACTCATCCCATAACTACGTAAACGAGATTGGAGATTGGGTTTTGTGTCGCTTATCGATGAAGAAAAGAAGTATAGAAAGTGGTGTTGATGAGAAGCAAAGAGTTCATGGTGGTCCAAGATTAATGTTTGATTTTATGATGTTGGGAAAAACAGATTCTTCTACATCGTCATCGTGTTCAAGTTCTAATAACATTATGGAAGTTTCTTCAAATGTATCGGATCATGAAGAAACAAGTGGTAGCTATACCTACTTTTAG 705 0.3858 MEKLNFVKNGVSKLPPGFRFQPTDEELVFQYLKCKVFSYPLPASIIPEINVCKHDPWDLPGNCDPQERYFFSPKEAKYRNGNRMNRTTKCGYWKATGSDKRISSSSNACNGIVGIRKTLIFYEGKSPKGSRTDWVLHEYRLANAETAACNSSHNYVNEIGDWVLCRLSMKKRSIESGVDEKQRVHGGPRLMFDFMMLGKTDSSTSSSCSSSNNIMEVSSNVSDHEETSGSYTYF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3445 234 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
Vra7g3445 234 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Vra7g3445 234 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 232 - -
Vra7g3445 234 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Vra7g3445 234 Gene3D NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Vra7g3445 234 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3445 Vra-Chr7 53773846 53775075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3445 1 173 NAC Transcription Factor Family AT5G13180 61.272 2.85e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra7g3445 NAM 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3445 - - gmx:100812015 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1406 4 20749586 20750995 Vra7g3445 7 53773846 53775075 ECH
Vra7g3445 7 53773846 53775075 Vra7g3445 7 53773846 53775075 ECH