Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3443 ATGGGTTGCGCCCTTCGAAAGCCGGCGGGTTCTGTCGACAGTCGCCGGGGTAAAACTTCGACTTCCGTCGGCGGGAATAATGCCGTTAAGATTCAGGAGAAGCAGGAGACTGTGCACGCCGGCGAACTTTCCGGCGTTATTCTGGCGCCGGAGCGCCGGAGACGTCGACTTGACTCATTCATGACGAGTCATCAAGGGTGGCCGCCGTGGCTGATGGTCGTCGCCGGCGATGCACTTGGAGACTGGACTCCTCGCCGTGCCAACACGTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAAGCAAGAGACCTTGTAACTGGGAAAATAGTGGCTTTGAAGAAAGTTAGATTTGACAATTTGGAGGCAGAGAGTGTGAAGTTCATGGCAAGAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTGAAGCTTGAAGGGTTGGTTACTTCAAGAATATCATCCAGTCTTTACTTGGTATTTGAGTACATGGAACATGATCTTGCTGGTCTTGCAGCTGGTTTGGGTGTCAAATTCTCTGAGCCACAGATCAAATGTTATATGAAGCAATTGCTATCTGGGCTTGAGCATTGCCATAGCAGAGGTGTTTTGCACCGTGATATCAAGGGTTCCAATCTGCTCATTGACAACCAAGGAATACTTAAAATTGCAGATTTTGGTTTGGCAACTTTCTATGATCCTAAGCAAAAACACCCTATGACCAGTAGAGTTGTGACCCTGTGGTACCGTCCCCCCGAGCTTCTTCTGGGGGCTACATCCTATGGCACTGGTGTCGACCTTTGGAGTGCTGGCTGCATTTTAGCAGAACTTCTTGCTGGAAAGCCAATCATGCCTGGCCGAACAGAGGTTGAGCAACTGCACAAGATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAGGAAATATAGATTGCCAAATGCTACACTCTTTAAGCCGCAGCAACCTTACAAAAGAAACATCTTAGAAACATTCAAGGATTTCCCTTCTTCTTCATTGCCTCTGATTGAAACTCTTCTTGCAATAGATCCTAATGATCGTGGCACTGCCTCATCTGCTCTAAATAGTGAGTTCTTTACCACTGAGCCATATACTTGTGAACCATCTAGTTTGCCAAAGTATCCTCCTACCAAAGAATTGGATATAAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAAAGTGGAAAAACTAATGCAGTTGATGGTGCCAAAAGGGTTAGAGTACGCGAGCGTAGTTTGGCCATTCCGGCCCCAGAAGCCAATGCGGAGATCCAAACCAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGTAAGAGTGAGAAATTCCCACCTCCTCATCAGGATGGAGCTGTTGGATATCCACTTGATGCATCAAACAAAGGAGCTGTTTCATTTGGAGCCACCGAAACATCCACAGCCTCTACCATATTTCATTCAAAATCTTCTGGATCTGTTAAAAGTCACGATCCTGCCAAAGACAAAGTGGGGAGAAGTAATACTGCAGACACCCAGATGACTTCACCTTGGAAATTTTTGCGTTCATTCAAGCTATCAACAATTGGTCATTCATTTGATTCATTATTTAGAAGCATTTAA 1653 0.4549 MGCALRKPAGSVDSRRGKTSTSVGGNNAVKIQEKQETVHAGELSGVILAPERRRRRLDSFMTSHQGWPPWLMVVAGDALGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEAESVKFMAREILVLRRLDHPNVVKLEGLVTSRISSSLYLVFEYMEHDLAGLAAGLGVKFSEPQIKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNQGILKIADFGLATFYDPKQKHPMTSRVVTLWYRPPELLLGATSYGTGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKYRLPNATLFKPQQPYKRNILETFKDFPSSSLPLIETLLAIDPNDRGTASSALNSEFFTTEPYTCEPSSLPKYPPTKELDIKLRDEEARRQKSGKTNAVDGAKRVRVRERSLAIPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPLDASNKGAVSFGATETSTASTIFHSKSSGSVKSHDPAKDKVGRSNTADTQMTSPWKFLRSFKLSTIGHSFDSLFRSI* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3443 550 Gene3D Phosphorylase Kinase; domain 1 77 172 - -
Vra7g3443 550 Pfam Protein kinase domain 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3443 550 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3443 550 MobiDBLite consensus disorder prediction 498 521 - -
Vra7g3443 550 Gene3D Transferase(Phosphotransferase) domain 1 173 414 - -
Vra7g3443 550 SUPERFAMILY Protein kinase-like (PK-like) 84 379 IPR011009 -
Vra7g3443 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vra7g3443 550 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Vra7g3443 550 SMART serkin_6 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3443 550 CDD STKc_CDK9_like 90 374 - -
Vra7g3443 550 MobiDBLite consensus disorder prediction 14 29 - -
Vra7g3443 550 PANTHER CELL DIVISION PROTEIN KINASE 63 501 - -
Vra7g3443 550 PANTHER OS01G0367700 PROTEIN 63 501 - -
Vra7g3443 550 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3443 Vra-Chr7 53747029 53751411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3443 82 428 Core Cell Cycle Gene Families AT5G10270 49.311 2.14e-117 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra7g3443 Pkinase 3.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3443 K08819 - gmx:100789359 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3443 7 53747029 53751411 Vra7g3443 7 53747029 53751411 ECH