Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3440 ATGGCAGCTTTTTCATCCCAATACTACCATCCCTTTCTACTTCACTCCACAAACAAAAAACTCTCTTCTTTGGGGGACCAACAACCCCTTATAAACACTCCTACCACCCTTTCTAATTTTCACAACCAAACGTCTCTCAATACTCTCACTAATCAAGAATCTACCATCAGTGACATTGAGCCTTCTGTCATCAAAAACCATAGCCCTCAGACATCCATGGTTGAGGACAAACTTGAAATAGGTGAACAAGTTACTCAAAAGGTTACCTCTATGCAGAAGAAGAGAAGACCAAAAAATGGACCTTCCTTCACCAGCCCTTTATCAATGGACTCGGCAGAAGGGGCAAACAAGAAACAAAAGAAAAGCAATGGTGGTGATCAAGGAGAAAACAAGCCAAAAGAAGTGAAGAAGGATCAAAAAAAGGGTCCAGAAGATCCTCCAACGGGGTATATCCACGTTAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCCGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTGGAGTTTTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTCTTTGACTTGGCAATGGAGTTAGACACCCTCACGGTTAGGCCTGATCAGAAGTTGAATAATGCAGCATCCCCATCACTACTACCATGTGTGGAACAATGCAGACCAAACCAGGCCATTGCTTTTGCTGACACAACCACCCTGACCACCACTACTAGCAGCTTCCCCACCGCTAATAATGATGACTATCTTTTGGATTATTCATCCTCATCTTTTCTTCAACCCCACAGGCCAAATGTCTTCTTCGAGTATAACGGTGGTCAGATTTGGGAAGTAGACCAGCGACAAAAGTTTCTTCAACCATATGGATTCGCCAATAATACTGGCTCTTTCAATTAA 1017 0.4317 MAAFSSQYYHPFLLHSTNKKLSSLGDQQPLINTPTTLSNFHNQTSLNTLTNQESTISDIEPSVIKNHSPQTSMVEDKLEIGEQVTQKVTSMQKKRRPKNGPSFTSPLSMDSAEGANKKQKKSNGGDQGENKPKEVKKDQKKGPEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMELDTLTVRPDQKLNNAASPSLLPCVEQCRPNQAIAFADTTTLTTTTSSFPTANNDDYLLDYSSSSFLQPHRPNVFFEYNGGQIWEVDQRQKFLQPYGFANNTGSFN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3440 338 MobiDBLite consensus disorder prediction 85 167 - -
Vra7g3440 338 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 338 - -
Vra7g3440 338 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 338 IPR024097 GO:0006355
Vra7g3440 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 226 IPR036638 GO:0046983
Vra7g3440 338 MobiDBLite consensus disorder prediction 114 167 - -
Vra7g3440 338 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Vra7g3440 338 CDD bHLH_AtBPE_like 149 225 - -
Vra7g3440 338 Gene3D - 156 227 IPR036638 GO:0046983
Vra7g3440 338 SMART finulus 165 215 IPR011598 GO:0046983
Vra7g3440 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Vra7g3440 338 MobiDBLite consensus disorder prediction 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3440 Vra-Chr7 53714061 53716940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3440 114 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 65.625 5.05e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g3440 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3440 - - pvu:PHAVU_002G283100g 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3440 7 53714061 53716940 Vra7g3440 7 53714061 53716940 ECH