Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3432 ATGATGTCTGGTTGGATGCAAGACACAGAAGAACAAAACTCTGCTTCATGGTCAAACCCAAACGCCAACGAGCTAAGCTGCTTCTACAAACCCATCTCCGACATCCATGAAGAATGGCACGTGCCCAACAACAACACCCAGATTCACTCACATGTTAGAGACACGGCTTTCTCCACCAACTTTGATCATAACATGTTACTCCATCAACACCAACCATTACACTCTTTCTCTTCTTCCACCAGCCTTCACCTATCTCAAGGGCACAACTTCTTCACCCCCAAACCCTTCTTTTACCCGTTGGACCACACCTTTCGCGCCGGTTCCGATGTGGGGTTTCTTGATCCTCATGCTTTGAACAAGGTTCATCATGGTGGTGTCTTCTCCAGCTCAAATGATAATAACCAGTTGGCCCTTCCAAATTTAGCAACCATGTGTGCATTGCCTCCCCAACAAGACGGTGTTGGATTTCCCGGATTCAAGAATGTCGTTGACTCTGATCATGTGGAGGGTTCAAGAAAGCCTTTGCTTCTGACCACGTCCAACGTACTGAAACCCCTTGAATCGTTCCCTGCATCAGGTGTACAACCTACACTTTTTCAGAAACGAGCAGCACTGAGGAAAAGCATGGAAGATAACTGCAAAGGCAAGAGTAAAGGGAATAGCGATAGTAGCAAGAGGAAGACTTATAAAAATGGAGAAGGTGATGAAGGGTCCGGGTTGAATCTTGATTCTGATGAGAGTGGTGAGATGGAAGAGAGTGGAAGGAACGGCGGAAACAGCTCGAATGCGAATAGCACCGTCACTGGCGGCGTGGATCATAAGGGCAAGAAGAAGACAGGGATACCTGCGAAGAACTTGATGGCCGAACGCCGGCGAAGAAAGAAGCTCAATGACAGACTCTACATGCTGAGATCAGTTGTTCCAAATATCAGCAAAATGGACAGAGCTTCAATACTGGGGGATGCAGTAGAGTATTTGAAGGAACTTCTGCAAAAGATTGGTGACCTTCACAATGAATTGGAGTCAACAACACCAGCTGGTTCTTCATTGACTTCAAGCTTTCTTCATCCCTTGACGCCCAAATTACCAACAAGTATGCAAGAAGAACTTTGTCTCAGCTCATTGCCAAGCCCTAATGGCCAACCTGTGAGGGTTGAGGTTGGGTTGAGCGAAGGAGGTGTAAAGATTCAGATGTGTTGTGAGAGGAAACCTGGTCTCTTGCTGTGTACCATGAGGGCTCTCGACAACCTTGGCATAGACATCCACCAAGCAGTCATCACCTATTTCAATGGATTTGCCATGGATATTCTCCGAGCTCAGATATGTAGCGAAGGTCAAGATGTCCGTCCAGAGCAAATCAAAGCAGTTCTATTAGATTCGGCTGGCTACCATGGCATGATCTAG 1404 0.4679 MMSGWMQDTEEQNSASWSNPNANELSCFYKPISDIHEEWHVPNNNTQIHSHVRDTAFSTNFDHNMLLHQHQPLHSFSSSTSLHLSQGHNFFTPKPFFYPLDHTFRAGSDVGFLDPHALNKVHHGGVFSSSNDNNQLALPNLATMCALPPQQDGVGFPGFKNVVDSDHVEGSRKPLLLTTSNVLKPLESFPASGVQPTLFQKRAALRKSMEDNCKGKSKGNSDSSKRKTYKNGEGDEGSGLNLDSDESGEMEESGRNGGNSSNANSTVTGGVDHKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAVEYLKELLQKIGDLHNELESTTPAGSSLTSSFLHPLTPKLPTSMQEELCLSSLPSPNGQPVRVEVGLSEGGVKIQMCCERKPGLLLCTMRALDNLGIDIHQAVITYFNGFAMDILRAQICSEGQDVRPEQIKAVLLDSAGYHGMI* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3432 467 MobiDBLite consensus disorder prediction 253 269 - -
Vra7g3432 467 CDD bHLH_AtAMS_like 283 354 - -
Vra7g3432 467 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 67 467 - -
Vra7g3432 467 MobiDBLite consensus disorder prediction 208 233 - -
Vra7g3432 467 CDD ACT_UUR-ACR-like 396 456 - -
Vra7g3432 467 Pfam Helix-loop-helix DNA-binding domain 287 329 IPR011598 GO:0046983
Vra7g3432 467 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Vra7g3432 467 PANTHER BHLH TRANSCRIPTIONAL FACTOR 67 467 - -
Vra7g3432 467 MobiDBLite consensus disorder prediction 208 281 - -
Vra7g3432 467 Gene3D - 273 344 IPR036638 GO:0046983
Vra7g3432 467 SUPERFAMILY ACT-like 392 466 IPR045865 -
Vra7g3432 467 SMART finulus 286 335 IPR011598 GO:0046983
Vra7g3432 467 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 349 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3432 Vra-Chr7 53642820 53646146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3432 99 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.829 2.57e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g3432 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3432 - - var:108344591 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3432 7 53642820 53646146 Vra7g3432 7 53642820 53646146 ECH