Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3431 ATGGCGTCGTCGGAGGTATCGATCAAGGGAAATTCGGTGAACGGTAAAGGAGAGAACAGTTCCGGTGGTTTCAACGGCTGCAACGATGTTAGGAACGCTGGAGGAGAGCTTCAGAATGCTTCTTCCTCGTCATCAGCCAGAGACGCGGAAACAGCGCTTTACAGGGAGCTATGGCACGCGTGCGCGGGTCCGCTGGTGACGGTGCCTAGAGAAGGAGAGCGCGTGTTCTACTTTCCTCAAGGACATATTGAGCAGGTGGAAGCGTCGACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCGAAGATCCTTTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGACACAGACGAGGTGTTTGCTCAAGTAACCTTACTTCCTGAGCCAAATCAAGACGAGAATGCGGTGGAGAAGGAGGGTCCTCCGGCACCGCCTCCCCGGTTTCACGTCCATTCGTTTTGTAAAACGCTTACGGCTTCTGATACGAGTACGCACGGTGGATTTTCGGTGTTGAGACGACATGCTGATGAATGCCTTCCCCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGGGAACGAGTGGCGATTCAGGCATATTTTTCGGGGTCAACCGCGTAGACACTTACTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTGGTTGCTGGGGATGCGTTTATATTTTTAAGGGGTGAGAATGGGGAACTTCGTGTTGGTGTTAGGCGTGCAATGAGGCAGCAGGGTAACGTTCCTTCCTCGGTTATCTCGAGCCACAGTATGCATCTTGGTGTTCTTGCAACTGCTTGGCATGCCATATTGACTGGAACCATGTTTACCGTGTATTACAAACCTAGGACTAGTCCAGCCGAATTTATAGTTCCGTATGATCAATACATGGAGTCCCTAAAAAACAATTACACCATCGGGATGCGCTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCCGAGCAAAGGTTTACCGGTACCATTGTGGGAATAGAAGATGCTGATCAAAAAAGGTGGCCTAACTCGAAATGGAGAAGCCTTAAGGTGAGGTGGGATGAAACTTCTAACGTACCTCGTCCTGAGAGAGTTTCCCAATGGAAAATAGAGCCCGCTCTCGCTCCTCCTGCTCTTAACCCTTTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCTGATTCCTCTGTTCTTACCCGTGAAGCATCATCTAAAGTGAGTGTGGACCCTTTGCCAGCAAGTGGATTTCAAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGTAAATTTTGCCGAAAGCAATGAATCTGATACGGCAGAGAAGTCTGCATGGTCATCTGCTGCAGACGATGAAAAGATTGATGTTGTTTCCACCTCTAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGGAAGGCATGAACCAACATATCCAGATCTGCTTTCTGGCTTTGGGGTTCATGGAGATCAGACTTCCCATCCATCGTTGGTTGATCAAAATGGTCCCATAGCTAACCTTAGTAGAAAACATTATTTCGACCGCGAAGGAAAACATAATGTTCTAAGTCCTTGGCCTGTAGTGCCATCTAGTCTATCACTCAATCTATTGGACTCTAATACAAAAGTCTCTGCTCAAGGTGGTGGTGATACAACTTCTCAAGTTCGAGGGAATTTGAGATTTAGCAGTGCATTTGGTGACTATACCGTGCTTCATGGACACAAAGTTGATCATTCACACGGAAACTTTTTGATGCCACCACCACTGTCAACTCAATATGAGAGCCCTCGTTCTAGAGAACTGTTACCTAAACCAATATCAGGAAAACCTTCTGAGGTATCAAAACCGAAGGACAGTGACTGTAAGCTATTTGGCATCTCACTTCTTAGTAGCCCCATTGCTCTGGACCCTTCTGTATCACAAAGGAATGTTGCAATCGAGCCAGTTGGTCACATGCATACTATACATCAACAGCGCACATATGAAAATGACCCAAAGTTTGAGAATTCAAGGGGATTGAAACCGGCTGATGGTGTGCTGATTGACGACCATGAAAAGCCTACGCAAACTTCTCAGCCACATCTGAAAGATGTTCAACCCAAATCTAATAGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAAGGGATTGCACTTGGTAGGTCGGTGGACCTCACAAAATTCAGTGCATATGATGAATTAATTGCTGAATTGGATGAGCTATTTGAATTCGGAGGTGAATTAACCTCTCCCCAAAAAGATTGGCTTATTGTCTACACTGATAACGAAGGCGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAATTTGTTGCTATGGTACGAAAAATTTATATCTATCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTAAGTTCAAAGAACGAAGAGAATCAATCGGCTAGTGAAGGTGCAGACGCCCAACAAGAAAATAAATGTCAGCTGAATCATTCAGCTTCAGAGGCCTGA 2571 0.4675 MASSEVSIKGNSVNGKGENSSGGFNGCNDVRNAGGELQNASSSSSARDAETALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADQKRWPNSKWRSLKVRWDETSNVPRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPASGFQRVLQGQELSTLRVNFAESNESDTAEKSAWSSAADDEKIDVVSTSRRYGSESWMSMGRHEPTYPDLLSGFGVHGDQTSHPSLVDQNGPIANLSRKHYFDREGKHNVLSPWPVVPSSLSLNLLDSNTKVSAQGGGDTTSQVRGNLRFSSAFGDYTVLHGHKVDHSHGNFLMPPPLSTQYESPRSRELLPKPISGKPSEVSKPKDSDCKLFGISLLSSPIALDPSVSQRNVAIEPVGHMHTIHQQRTYENDPKFENSRGLKPADGVLIDDHEKPTQTSQPHLKDVQPKSNSGSARSCTKVHKKGIALGRSVDLTKFSAYDELIAELDELFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGADAQQENKCQLNHSASEA* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3431 856 MobiDBLite consensus disorder prediction 685 734 - -
Vra7g3431 856 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 39 839 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra7g3431 856 MobiDBLite consensus disorder prediction 609 641 - -
Vra7g3431 856 Pfam AUX/IAA family 778 820 IPR033389 -
Vra7g3431 856 Gene3D - 728 821 - -
Vra7g3431 856 Gene3D - 156 261 IPR015300 -
Vra7g3431 856 SMART B3_2 159 261 IPR003340 GO:0003677
Vra7g3431 856 Gene3D - 322 392 - -
Vra7g3431 856 MobiDBLite consensus disorder prediction 392 432 - -
Vra7g3431 856 MobiDBLite consensus disorder prediction 411 426 - -
Vra7g3431 856 MobiDBLite consensus disorder prediction 393 409 - -
Vra7g3431 856 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Vra7g3431 856 MobiDBLite consensus disorder prediction 820 856 - -
Vra7g3431 856 PANTHER AUXIN RESPONSE FACTOR 2 39 839 - -
Vra7g3431 856 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Vra7g3431 856 CDD B3_DNA 157 259 IPR003340 GO:0003677
Vra7g3431 856 MobiDBLite consensus disorder prediction 716 734 - -
Vra7g3431 856 MobiDBLite consensus disorder prediction 685 715 - -
Vra7g3431 856 ProSiteProfiles PB1 domain profile. 732 814 IPR000270 GO:0005515
Vra7g3431 856 Pfam Auxin response factor 285 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra7g3431 856 SUPERFAMILY DNA-binding pseudobarrel domain 155 288 IPR015300 -
Vra7g3431 856 SUPERFAMILY CAD & PB1 domains 733 809 - -
Vra7g3431 856 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3431 Vra-Chr7 53637272 53642215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3431 1 842 B3 DNA Binding Superfamily AT5G62000 65.278 0.0 1089
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra7g3431 AUX_IAA 1.7e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3431 - - gmx:100815956 1480.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3431 7 53637272 53642215 Vra7g3431 7 53637272 53642215 ECH