Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3430 ATGCATTTCGCGAATCTCGATGACACTCCGATGTTCCGTCAACAGATGCAGTGTTTGGAGGAAAGTGCAGAATCGTTGCGTGCGAGATGCTGCAAGTTCTATAAAGGATGTCGAAAGTACATGGAAGGTCTTGGAGAGGCATATGATGGGGACATTGCATTTGCAAGTGCCATAGAAAACTTCGGTGGCGGGCAGAATGATCCTCATTTTATTGCTTTGGGAGGACCTGTTTTGACCAAATATACTCTAGCATTGAGAGAAATCAGTACATACAAGGAACTGCTGCGGTTACAAGTAGAGTATATTTTCAATCATCGGTTACAACCGATTGTCAATGTTGACATCCATGAAGTCAAGGAAGCTCGCAAACGTTTTGATAAATCCTCCCTTGTATATGATCAGGCACGTGAAAAATTTATGTCACTCAGAAAAAGTACTAAGATTGACATTGCCACTGTCGTAGAAGAGGAACTGCAGGAGGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATTTGGTTGGCACTCTTAATAATGTTGAGGTGAAGAAGAGATTCGAGTTTTTAGAGGCTGTAACTGGAATTATGGATGCTCACTTTCGATATTTTCAACAGGGGTATCAGCTATTGCATCAGATGGAACCTTTCATCACTGAGATTATGGACTATGTACATCAGTCAAGAGAAAATTACAATAACGAGCAGATTCAACTTTATCAAAGAATGCAAGACTACAAGAAACAAGCTTACGAAGAAAGTAGGTTGTCGTTGAGTGGTCCCTGTGGTTCTCTTCTTGGAGACTCTGCACATCCATTTTCTAGGATATCAAATGAGGCAGCAGATGTAGTAATGGAATCTGCTGCAAATGGAAAGATTCAAATCATTCGGCAAGGGCATCTTTCAAAACGATCCTCCAATTTGAGAGCTGATTGGAAAAGAAGGTATTTTGTTCTTGACAGTCGGGGAATGTTGTACTACTACCGCAAGCCCTGGAGCGGGTCATATGGCAGCAATCAACCATCTCCAAAGAGGAATAGTGGCATTGAAAATGGTTCTGGGATTCTAAGTCGATGGCTCTCTTCTCATTACCATGGAGGCGTCCATGATGAAAGATCCATAGCACGTCATACAGTTAACCTGCTGACATCAACAATCAAGGTTGATGCTGATCAGTCAGATTTGAGATTCTGCTTCAGGATTATTTCGCCTACAAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGCAAAAGATAAATGGAGTAATTGCTACCTTGTTGACTGTGCAGACACTGGGAACGCCTCCCTCAGCTGACTCAGAAAACGACGACTCTCACTCTGATGACAATATTGATAAGTCTGAAAGTTTTCCAGATGATGATCATGCTTTGAGAGCGAAGTCTGCATTGAATAAAACCACCCGTAATAAGCACTTACGTTCGTCTAGAAGTATGCACGTACATACACACACTGTGAGAATTGAAAAGCCAATTGATGTTCTTAGAAGTGTGAGCGGAAATGATAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTCATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCGCTGACACTTGATGTTAAAGTTTGGGATTCCTCAGTCTTAAGTATGCTTAAATCACTAGGCAATCTTTTTTCAAACTCAGTTTGGGAGGAGTTGTTGCATTCACAGGGTAATCTGGAAACTGTTGACACCCTTGCTAGTTCATCCAAGGAAAATGAAGAGGAGATCTTCCATGCAAGAAAGCCAAAACATGATGATCCGATTTTAGTAAAGGAAAGGTTCATTCATGCAAAGTATTGTGAGAAAATATTTATTCCCCGGATCACGGAAAGCCAGCCTATCCATTCACTAGCGCAACAGTTGCAGGAAAGCATCTGTGCAAATGACAAAAAAGCAGTGTACCAGCTTATTGTGAAGTCGAATGTTGACGTCAATGCCATCGATTTGTCTGGTGACACTCTGGACATGGCTTCAAGTAATTCAAACATTGCATCTCAAAGTGAAAATCAGCTCGTTGAGGACGTAAAAGATGGCTCTAGCGCGCTTCACCTGGCTTGCCTAAATAGTGACATTGGCATGGTGGAGTTACTCCTACAGCTTGGGGCAGATATAAATGCTTCCGATTCTAGAGGTCGGACACCACTTCATTCTTCTATTATTGGAGGGAAGAATGCAGCTGCAAAAGTGCTTATCTTGAGGGGAGCCAATACATATGTTGCAGATAAAGAAGGCAACACTCCTATTAAGCTTGCATCAGAATCCAACTGCGTTGACAGAGAAATTATCAATCTTTTGACAAGCAGATAA 2403 0.4182 MHFANLDDTPMFRQQMQCLEESAESLRARCCKFYKGCRKYMEGLGEAYDGDIAFASAIENFGGGQNDPHFIALGGPVLTKYTLALREISTYKELLRLQVEYIFNHRLQPIVNVDIHEVKEARKRFDKSSLVYDQAREKFMSLRKSTKIDIATVVEEELQEARASFEEARFNLVGTLNNVEVKKRFEFLEAVTGIMDAHFRYFQQGYQLLHQMEPFITEIMDYVHQSRENYNNEQIQLYQRMQDYKKQAYEESRLSLSGPCGSLLGDSAHPFSRISNEAADVVMESAANGKIQIIRQGHLSKRSSNLRADWKRRYFVLDSRGMLYYYRKPWSGSYGSNQPSPKRNSGIENGSGILSRWLSSHYHGGVHDERSIARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAENAVDQMDWMQKINGVIATLLTVQTLGTPPSADSENDDSHSDDNIDKSESFPDDDHALRAKSALNKTTRNKHLRSSRSMHVHTHTVRIEKPIDVLRSVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMLKSLGNLFSNSVWEELLHSQGNLETVDTLASSSKENEEEIFHARKPKHDDPILVKERFIHAKYCEKIFIPRITESQPIHSLAQQLQESICANDKKAVYQLIVKSNVDVNAIDLSGDTLDMASSNSNIASQSENQLVEDVKDGSSALHLACLNSDIGMVELLLQLGADINASDSRGRTPLHSSIIGGKNAAAKVLILRGANTYVADKEGNTPIKLASESNCVDREIINLLTSR* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3430 800 Pfam Putative GTPase activating protein for Arf 502 634 IPR001164 GO:0005096
Vra7g3430 800 ProSiteProfiles ARF GTPase-activating proteins domain profile. 499 644 IPR001164 GO:0005096
Vra7g3430 800 MobiDBLite consensus disorder prediction 445 463 - -
Vra7g3430 800 CDD BAR_SFC_plant 15 215 IPR035670 -
Vra7g3430 800 SMART ANK_2a 742 771 IPR002110 GO:0005515
Vra7g3430 800 SMART ANK_2a 709 738 IPR002110 GO:0005515
Vra7g3430 800 PANTHER CENTAURIN/ARF 1 800 IPR045258 GO:0005096
Vra7g3430 800 Pfam BAR domain of APPL family 6 233 - -
Vra7g3430 800 CDD PH_ACAP 295 432 - -
Vra7g3430 800 SUPERFAMILY ArfGap/RecO-like zinc finger 498 638 IPR037278 -
Vra7g3430 800 ProSiteProfiles Ankyrin repeat region circular profile. 709 740 - -
Vra7g3430 800 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vra7g3430 800 ProSiteProfiles Ankyrin repeat region circular profile. 742 774 - -
Vra7g3430 800 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Vra7g3430 800 PRINTS HIV Rev interacting protein signature 511 530 IPR001164 GO:0005096
Vra7g3430 800 PRINTS HIV Rev interacting protein signature 530 547 IPR001164 GO:0005096
Vra7g3430 800 PRINTS HIV Rev interacting protein signature 553 574 IPR001164 GO:0005096
Vra7g3430 800 SUPERFAMILY PH domain-like 203 428 - -
Vra7g3430 800 Pfam Ankyrin repeats (many copies) 711 763 IPR002110 GO:0005515
Vra7g3430 800 ProSiteProfiles Ankyrin repeat profile. 709 741 IPR002110 GO:0005515
Vra7g3430 800 Gene3D Arf GTPase activating protein 478 641 IPR038508 -
Vra7g3430 800 SUPERFAMILY Ankyrin repeat 656 799 IPR036770 -
Vra7g3430 800 MobiDBLite consensus disorder prediction 437 463 - -
Vra7g3430 800 Coils Coil 227 247 - -
Vra7g3430 800 Gene3D - 642 800 IPR036770 -
Vra7g3430 800 Gene3D - 285 436 IPR011993 -
Vra7g3430 800 ProSiteProfiles Ankyrin repeat profile. 742 774 IPR002110 GO:0005515
Vra7g3430 800 SMART PH_update 293 430 IPR001849 -
Vra7g3430 800 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 800 - -
Vra7g3430 800 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Vra7g3430 800 Pfam PH domain 294 427 IPR001849 -
Vra7g3430 800 SMART arf_gap_3 499 644 IPR001164 GO:0005096
Vra7g3430 800 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Vra7g3430 800 CDD ArfGap 502 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3430 Vra-Chr7 53603060 53622139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3430 505 585 C2H2 Transcription Factor Family AT4G21160 52.439 1.55e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3430 K12489 - gmx:100792517 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3430 7 53603060 53622139 Vra7g3430 7 53603060 53622139 ECH