Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3424 ATGGAACAGAAAAGCATTCTGATATCGGCTTTGGGTGTTGGGGTGGGTGTTGGAGTGGGCATTGGATTGGCTTCTGGACAAGGCGTTGGCAAATGGGTAGCCAACACTTCTTCCTCAAACACTATCACTGCTGAGAAGATGGAGCAGGAAATGCTCAGACAAGTTGTTGATGGAAGAGAAAGCAACGTCACTTTTGAGAAATTCCCTTATTATCTCAGTGAGCAGACAAGGGTTTTGCTGACAAGTGTGGCTTATGTCCATTTAAAGCATGCTGATGTTTCTAAATATACACGGAATCTTGCTCCTGCAAGCAGAACTATTCTGCTCTCAGGACCAGCAGAGCTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTATTTTGAGGCCAAGTTACTGCTGTTAGATTTAACCGACTTTTCATTGAAGATTCAGAGTAAATATGGTTCTTCCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGTCTACTTTGGAACGGCTATCCGATCTATTTGGATCATTTTCAATCTTTTCACAAAGGCAAGAACTTAAAGGAAAAATGCACAGGCCTAGCAGTGTAATAGACCTCCAATCAATGGGTACCGAAGCATCTTGTAATCCTCCACCACTCCGTAGGACTGCTTCTTCCTCTTCAAACATAAGTGGCCTTTCTTCCCAAACCAATGCTACAAATTCAGCTTCTCTGAAGCGCGCAACCAGCTGGTCTTTTGACGAAAAGCTTCTTATACAGTCTCTTTACAAGGTTCTGGTTTTCGTGTCAAAAACCTATCCCATTGTGCTATATTTGCGGGATGTTGATAAGCTGTTATACAAATGGCAAAGAATATATTACTTGTTCCAGAAAATGTTGAAAAAACTATCTGGATCCATTTTGATTCTTGGTTCACGAGTTATAGATTGTGGTAATGACTATGAAGAGGTGAATGAGAAGCTTGATTCACTCTTCCCATACACCATAGAAATCAGGCCCCCAGAAGATGAGTCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTAAGGATAACAAAATTCATATCATGGAAGTCCTTGCAGCAAACGATCTCGATTGTGATGACCTAGATTCCATATGTGTGGAAGACACAATGGTTCTCAGTAACTATATAGAAGAGATCATTGTGTCAGCAATTTCGTATCATTTGATGAAAAACAAAGACCCTGAATACAGAAATGGCAAGCTCGTTATTTCTTCCAATAGCTTGTCCCATGCATTGAGTATATTTCACAAGGGGAAATGCAGTAGAGAAGACACGTTAAAATTAGAAGATCAAGCTGTAAAATCAGAGAAACAAAGCGAGAAAGGAACTGATATGAAATCAGAAGCAAAGTCTGAAAATGCTGCTCCTATAAAAAAGGCTGAAGCAGAAATATCAACTTCGGTGGGCAAGGCGGATGGTGAAAAATCAGTTCCTGCTCCCAAAGCCCCTGGAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAATGAGATTGATGTTACATTCTCTGACATTGGTGCCTTGGATGAGACCAAAGAATCCCTTCAAGAACTAGTGATGCTTCCTCTTCGAAGGCCGGACCTTTTCACCGGGGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCTCCTGGCACTGGGAAGACCATGCTGGCAAAGGCCATTGCAAAGGAGGCTGGAGCAAGTTTCATCAATGTTTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGTGCTCTATTCACACTTGCTGCCAAGGTCTCCCCAACTATTATATTTGTGGATGAGGTTGATAGCATGCTTGGGCAACGTACCAGAGTAGGGGAGCATGAAGCCATGAGGAAAATAAAGAATGAATTTATGACCCATTGGGATGGACTTTTGACAAAGCCAGGAGAGAGAATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGATCTCGATGAAGCTATTATTAGGCGATTTGAAAGAAGAATTATGGTAGGACTACCGTCTGTGGAAAACAGGGAAAAGATTTTGAAGACTCTTTTAGCAAAAGAGAATATGGACACCGAACTTGATCTTAAGGAACTTTCAACTATGACAGAAGGATATACTGGAAGTGATCTTAAGAACTTGTGCACAACTGCTGCTTATCGGCCCGTTAGAGAGCTAATTCAGCAAGAGAGACTAAAGAGTTTGGATAAAAAGCAGAAAGCTGCCAAGAGACAGAATGAAGATGTCCAAGATAGTGAAGGTGGACAAGAAATTGAGCAAGAAATAGTTATTGCCCTTAGGCCGTTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCTGAAGGGGCTGGAATGAGTGAGTTGAAACAATGGAATGATTTGTATGGAGAAGGGGGTTCAAGGAAGCAGCAGCAGTTGTCTTACTTCCTATGA 2520 0.4175 MEQKSILISALGVGVGVGVGIGLASGQGVGKWVANTSSSNTITAEKMEQEMLRQVVDGRESNVTFEKFPYYLSEQTRVLLTSVAYVHLKHADVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSNKESSFKRSTSESTLERLSDLFGSFSIFSQRQELKGKMHRPSSVIDLQSMGTEASCNPPPLRRTASSSSNISGLSSQTNATNSASLKRATSWSFDEKLLIQSLYKVLVFVSKTYPIVLYLRDVDKLLYKWQRIYYLFQKMLKKLSGSILILGSRVIDCGNDYEEVNEKLDSLFPYTIEIRPPEDESHLVSWKSQLEEDMKMIQVKDNKIHIMEVLAANDLDCDDLDSICVEDTMVLSNYIEEIIVSAISYHLMKNKDPEYRNGKLVISSNSLSHALSIFHKGKCSREDTLKLEDQAVKSEKQSEKGTDMKSEAKSENAAPIKKAEAEISTSVGKADGEKSVPAPKAPGVPPDNEFEKRIRPEVIPANEIDVTFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILKTLLAKENMDTELDLKELSTMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKSLDKKQKAAKRQNEDVQDSEGGQEIEQEIVIALRPLNMQDFKEAKNQVAASFAAEGAGMSELKQWNDLYGEGGSRKQQQLSYFL* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3424 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 354 IPR027417 -
Vra7g3424 839 Gene3D - 694 773 - -
Vra7g3424 839 MobiDBLite consensus disorder prediction 447 506 - -
Vra7g3424 839 Gene3D - 521 693 IPR027417 -
Vra7g3424 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 759 IPR027417 -
Vra7g3424 839 MobiDBLite consensus disorder prediction 203 229 - -
Vra7g3424 839 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
Vra7g3424 839 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 839 - -
Vra7g3424 839 MobiDBLite consensus disorder prediction 447 472 - -
Vra7g3424 839 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
Vra7g3424 839 CDD AAA 560 693 - -
Vra7g3424 839 SMART AAA_5 558 695 IPR003593 -
Vra7g3424 839 Coils Coil 754 774 - -
Vra7g3424 839 Pfam AAA+ lid domain 716 753 IPR041569 -
Vra7g3424 839 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3424 Vra-Chr7 53546081 53551899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3424 522 772 Calmodulin-binding Proteins AT3G56690 38.189 1.28e-43 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3424 - - gmx:100807464 1423.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0249 11 1706428 1712352 Vra7g3424 7 53546081 53551899 PCT