Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3412 ATGGACATTCTACCCATTTTATGTTCCATTTCCCTTTTGTGTTTGGTTATGTGGGAAGGAAGTGGTGAACCTCTTGAAGATAAGGAGGCGTTGCTTGAGTTTGTGAACAAGTTCCCTCCTTCCAGGCCTCTGAATTGGAATGAGAGTTCCCCCATGTGTGCTTCTTGGACTGGTGTGACTTGCAATGAAGACAGGTCCAGAGTAATTGCAATTAGGTTGCCAGGGGTTGGATTTCATGGCACTATTCCACCTGACACTATTAGCCGTCTCGCAGCACTGCAAACTTTGAGCCTCAGATCCAATGTGATATCTGGGCCTTTCCCTTCTGATTTTTCCAATCTAAAGAACTTGTCTTTCCTCTACCTTCAGTTCAACAACTTGTCTGGGCCTTTGCCTGATTTCTCGGCCTGGAAGAACCTCACTGTCGTCAATTTGTCCAATAACCATTTCAATGGCAGCATTCCTGTCTCCCTTAACATCTTGCCTCAGCTTTCTGGTTTGAACCTTGCAAACAACTCTCTTTCCGGGGAAATTCCTGAACTCAACTTGTCAAGATTGCAGGTGCTGAATCTGTCCAACAACAATTTGCAGGGAACTGTGCCCAAATCTCTGTTGAGGTTTCCTGAGTCTGCATTCTCTGGGAATAACATTTCCTTTGGAATTTTTCCCCCAGTTTCTCCGGCACCTCAGCCCGCTTTTGAGCCGGCTTTGAAGTCCAGGAGGCGTAGAAAGCTCAGTGAGGCGGCGCTGTTGGGAGTGGTTGTTGCTGCTGCTGTTTTAGGCCTCGTGGCTTTTGTTTCTTTGACTTTTGTGTGCTGCTCAAGAAGAGGTGAGGAAGATGAGGAAACCTTCGGTGGGAAGTTGCACAAGGGAGAAATGTCTCCTGAGAAAGCTGTCTCAAGGAATCAGGATGCAAATAATAAGCTGGTTTTCTTTGAGGGATGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCCGCTGAGGTTCTGGGAAAGGGAACGTTTGGAACTGCCTACAAGGCAATACTAGAAGATGCTACCACGGTTGTTGTGAAGAGATTAAAGGAGGTAGCTGCTGGGAAGAAGGATTTTGAGCAGCACATGGAGATTGTTGGAAGTCTTAAGCATGAGAATGTTGTTGAGCTCAAGGCATATTATTATTCCAAAGATGAGAAACTCATGGTATATGATTATCACAGTCAGGGGAGCATAGCTTCCATATTGCATGCCAAGAGAGGAGAGGAGAGGGTGCCTTTAGATTGGGATACAAGGTTGAAAATAGCCTTAGGTGCTGCAAGAGGAATTGCTCGTATCCATGTTGAGAACGGTGGCAAGCTGGTACATGGCAACATCAAATCCTCAAACATCTTTCTGAACACCAAACATTATGGATGTGTGTCTGACCTTGGTCTGGCAACCATATCAAGCTCACTGGCCTTACCAATATCACGAGCAGCCGGTTACCGGGCACCGGAAGTGACAGACACCAGAAAAGCAGCACAGCCCTCAGATGTTTACAGTTTTGGTGTGGTGCTGCTAGAGCTTCTGACCGGGAAATCCCCTATCCACACCACTGGTGGTGATGAGATTATCCACCTTGTGAGGTGGGTTCATTCAGTTGTGCGTGAGGAATGGACAGCTGAAGTGTTTGACGTGGAACTGATGAGATATCCAAACATAGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTGAGGATGCCTGATCAAAGGCCTAGGATGTCTGAAGTTGTCAAGATGATAGAAAATGTGAGGCAGATTGTTGCAGAACCTTATTCATCGTCTGGGAACCAAGCTGAACAACTCAAATTGTCTCAACGTGACAGTGGTAACTCTCCTTCCACTCCCTCCTACTTCCCCAGAGGAAGTGAATGA 1914 0.4624 MDILPILCSISLLCLVMWEGSGEPLEDKEALLEFVNKFPPSRPLNWNESSPMCASWTGVTCNEDRSRVIAIRLPGVGFHGTIPPDTISRLAALQTLSLRSNVISGPFPSDFSNLKNLSFLYLQFNNLSGPLPDFSAWKNLTVVNLSNNHFNGSIPVSLNILPQLSGLNLANNSLSGEIPELNLSRLQVLNLSNNNLQGTVPKSLLRFPESAFSGNNISFGIFPPVSPAPQPAFEPALKSRRRRKLSEAALLGVVVAAAVLGLVAFVSLTFVCCSRRGEEDEETFGGKLHKGEMSPEKAVSRNQDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAAGKKDFEQHMEIVGSLKHENVVELKAYYYSKDEKLMVYDYHSQGSIASILHAKRGEERVPLDWDTRLKIALGAARGIARIHVENGGKLVHGNIKSSNIFLNTKHYGCVSDLGLATISSSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPRMSEVVKMIENVRQIVAEPYSSSGNQAEQLKLSQRDSGNSPSTPSYFPRGSE* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3412 637 MobiDBLite consensus disorder prediction 605 637 - -
Vra7g3412 637 Gene3D Ribonuclease Inhibitor 136 224 IPR032675 -
Vra7g3412 637 Gene3D Transferase(Phosphotransferase) domain 1 402 620 - -
Vra7g3412 637 PANTHER OS05G0588300 PROTEIN 21 604 - -
Vra7g3412 637 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Vra7g3412 637 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vra7g3412 637 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Vra7g3412 637 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Vra7g3412 637 Gene3D Phosphorylase Kinase; domain 1 292 400 - -
Vra7g3412 637 PANTHER PROTEIN, PUTATIVE-RELATED 21 604 - -
Vra7g3412 637 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Vra7g3412 637 SUPERFAMILY L domain-like 37 207 - -
Vra7g3412 637 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3412 637 ProSiteProfiles Protein kinase domain profile. 326 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3412 Vra-Chr7 53425059 53429394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3412 16 630 Receptor kinase-like Gene Family AT4G23740 64.809 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra7g3412 Pkinase 5.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3412 - - gmx:100804799 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0239 11 1624094 1627199 Vra7g3412 7 53425059 53429394 PCT