Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra7g3411 | ATGGCTTCGTCTGCCATCAAGCAAACACAACACCTTAACCGCACCAAACTCCTCGTCCAACAACACACCCTTTTGAAAAACCATCACCATCCCAAACTCGTGCGGATACGTGTCACCGACGCCGACGCCACGGACTCCTCCAGCGACGACGAGCAGCCCTCCGTGTCCTCCACGCGCCGCCGAGTCAAAAGCTTCGTCAACGAGATTACCATCCACGGCGCCGGAGTCAAAGTTGTTTCCAGGAAAAGAAAGGTAAAGTCAGGCGGTGCTCCGGCGCTTCGGCGGCGAACTGGGGCGAGGAAGTTCCGCGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGTCGCGCCGCGTGCGGCTGTGGCTGGGCACCTACGACACCGCCGAAGAAGCCGCCATTGTGTACGACAACGCCGCCATTCAGCTGCGTGGCGCCGACGCGCTCACTAATTTCATAACGCCCCCGGCGGAGGACAGAAAAAGCGGTTACTGCTCCGGCGAGGAGTCTCCCAGCGAGGAGCTGCGTTCCCCTACTTCAGTTCTTCGGTGCTGTTGGGCGTCCGAGGAAGCTGAGTCGGTAACCGCAAACGACGCGGTTGGTCCGGCGAGCGAGTGCGAACATTCATGGTTTTCGGAGGACAGTAAGTTGAAAGATGAGTCAGTGTTTGGTATTCCTGAGGACGTTGTATTCGGATTTGAAAGCAGTTTGGATATGTTTGACGAGTGCGATAAGAACGTTGCAGAGAGCAGTGGTATATTCTTGGGCGATGAATTTGATTTGAGTGGATGCTTTGTTACTGAGAAAGAGAATTTAGATTTGGGTTTTGGGTTTACGAGTTGGCAGAGAGAGTGCGATAATTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCTCTTTGA | 927 | 0.5523 | MASSAIKQTQHLNRTKLLVQQHTLLKNHHHPKLVRIRVTDADATDSSSDDEQPSVSSTRRRVKSFVNEITIHGAGVKVVSRKRKVKSGGAPALRRRTGARKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEDRKSGYCSGEESPSEELRSPTSVLRCCWASEEAESVTANDAVGPASECEHSWFSEDSKLKDESVFGIPEDVVFGFESSLDMFDECDKNVAESSGIFLGDEFDLSGCFVTEKENLDLGFGFTSWQRECDNFQDIGDLFVWDPLVAL* | 309 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra7g3411 | 308 | ProSiteProfiles | AP2/ERF domain profile. | 101 | 158 | IPR001471 | GO:0003700|GO:0006355 | |
Vra7g3411 | 308 | CDD | AP2 | 101 | 157 | IPR001471 | GO:0003700|GO:0006355 | |
Vra7g3411 | 308 | Gene3D | AP2/ERF domain | 100 | 159 | IPR036955 | GO:0003700|GO:0006355 | |
Vra7g3411 | 308 | MobiDBLite | consensus disorder prediction | 39 | 59 | - | - | |
Vra7g3411 | 308 | SMART | rav1_2 | 101 | 164 | IPR001471 | GO:0003700|GO:0006355 | |
Vra7g3411 | 308 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 | 5 | 304 | - | - | |
Vra7g3411 | 308 | PRINTS | Ethylene responsive element binding protein signature | 102 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Vra7g3411 | 308 | PRINTS | Ethylene responsive element binding protein signature | 124 | 140 | IPR001471 | GO:0003700|GO:0006355 | |
Vra7g3411 | 308 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 304 | - | - | |
Vra7g3411 | 308 | Pfam | AP2 domain | 101 | 150 | IPR001471 | GO:0003700|GO:0006355 | |
Vra7g3411 | 308 | SUPERFAMILY | DNA-binding domain | 101 | 157 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra7g3411 | Vra-Chr7 | 53414705 | 53416337 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra7g3411 | 1 | 308 | AP2-EREBP Transcription Factor Family | AT4G23750 | 40.741 | 9.79e-57 | 185 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vra7g3411 | AP2 | 3e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra7g3411 | - | - | gmx:100813992 | 418.313 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vra11g0238 | 11 | 1614506 | 1616528 | Vra7g3411 | 7 | 53414705 | 53416337 | PCT |