Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3411 ATGGCTTCGTCTGCCATCAAGCAAACACAACACCTTAACCGCACCAAACTCCTCGTCCAACAACACACCCTTTTGAAAAACCATCACCATCCCAAACTCGTGCGGATACGTGTCACCGACGCCGACGCCACGGACTCCTCCAGCGACGACGAGCAGCCCTCCGTGTCCTCCACGCGCCGCCGAGTCAAAAGCTTCGTCAACGAGATTACCATCCACGGCGCCGGAGTCAAAGTTGTTTCCAGGAAAAGAAAGGTAAAGTCAGGCGGTGCTCCGGCGCTTCGGCGGCGAACTGGGGCGAGGAAGTTCCGCGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGTCGCGCCGCGTGCGGCTGTGGCTGGGCACCTACGACACCGCCGAAGAAGCCGCCATTGTGTACGACAACGCCGCCATTCAGCTGCGTGGCGCCGACGCGCTCACTAATTTCATAACGCCCCCGGCGGAGGACAGAAAAAGCGGTTACTGCTCCGGCGAGGAGTCTCCCAGCGAGGAGCTGCGTTCCCCTACTTCAGTTCTTCGGTGCTGTTGGGCGTCCGAGGAAGCTGAGTCGGTAACCGCAAACGACGCGGTTGGTCCGGCGAGCGAGTGCGAACATTCATGGTTTTCGGAGGACAGTAAGTTGAAAGATGAGTCAGTGTTTGGTATTCCTGAGGACGTTGTATTCGGATTTGAAAGCAGTTTGGATATGTTTGACGAGTGCGATAAGAACGTTGCAGAGAGCAGTGGTATATTCTTGGGCGATGAATTTGATTTGAGTGGATGCTTTGTTACTGAGAAAGAGAATTTAGATTTGGGTTTTGGGTTTACGAGTTGGCAGAGAGAGTGCGATAATTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCTCTTTGA 927 0.5523 MASSAIKQTQHLNRTKLLVQQHTLLKNHHHPKLVRIRVTDADATDSSSDDEQPSVSSTRRRVKSFVNEITIHGAGVKVVSRKRKVKSGGAPALRRRTGARKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEDRKSGYCSGEESPSEELRSPTSVLRCCWASEEAESVTANDAVGPASECEHSWFSEDSKLKDESVFGIPEDVVFGFESSLDMFDECDKNVAESSGIFLGDEFDLSGCFVTEKENLDLGFGFTSWQRECDNFQDIGDLFVWDPLVAL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3411 308 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Vra7g3411 308 CDD AP2 101 157 IPR001471 GO:0003700|GO:0006355
Vra7g3411 308 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Vra7g3411 308 MobiDBLite consensus disorder prediction 39 59 - -
Vra7g3411 308 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Vra7g3411 308 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 5 304 - -
Vra7g3411 308 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Vra7g3411 308 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vra7g3411 308 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 304 - -
Vra7g3411 308 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Vra7g3411 308 SUPERFAMILY DNA-binding domain 101 157 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3411 Vra-Chr7 53414705 53416337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3411 1 308 AP2-EREBP Transcription Factor Family AT4G23750 40.741 9.79e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g3411 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3411 - - gmx:100813992 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0238 11 1614506 1616528 Vra7g3411 7 53414705 53416337 PCT