Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3400 ATGGCGAGTGAATGGAGCTGGGAGCAGAACACACTCATCAATGAGCTAATTCAAGGGATGGAGTTAGCAAGGAAGTTGAAGGAAGACTTGAGACTGCCGTATTCAGTTGACTCAAAAGATATGCTGCTGCAGAGGATATTATCTTCTTATGAAAAGGCTCTACTCATTCTAAGATGCAATGCATCAACTTCCGAGTTGCAGGCCACGAGTCAAGCAACTGCGGCTTTGTTACCGGAGTCCCCAATATCTGTCCATGGAAGTCCTCTGAGTGAGGATCTTGATGGGGTCATCAAGGATCACCAAGAAATTCAACATGATTCAAAGAAAAGAAAGATAACGCCCAAATGGATGGATCATGTAAGAGTGAGCTGCGAGAGTGGTCTTGAAGGACCACAAGAAGATGGCTACAACTGGAGAAAATATGGTCAGAAAGACATCCTCGGAGCAAAATATCCCAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGGGCTGTTGGGCAACGAAGCAAGTGCAGAGATCAGATGAAGATCCCACAATATTTGACATAACCTACAGAGGAAAGCATACCTGTTCTCAAGGAAACAACGCCGTTTTGCCACCTAAGTCACCAGACAAACAAGAGAAGACACACAGACATAACGTTGACATTCACCATGCACAGGCATCACAAGAAAGCCTTACAAAGTTCAGAAACATCTTGTCTGTCAACACAGATAAACTAGACAATGGAGATATGGCATATCCTTTCACTTTCCCTTCGACTTCATTTGGATGCATGAAACAATACAGCCACAGCTTGATTCCTGGGACCCTAGAGAATGAGTACTTCTTGAGCGATCAATACCAAACGCACCTGTTATCTCCAACAACACCGGAATCAAACTATCTCCCATCCCCAACTTTCCAGATGAATGAGTTTGATGGAATCCTCAACAAGCCTTATTCAGACTCAGATATTAATGAGATCATTTCCACCAACACATCAGCAACCAATTCTCCAATTCCCGATTTCAATTTCTCACTTGATCCAGTGGAAATTGACCCGAATTTCCCTTTCAACAACCCAGGATTTTTCTCCTGA 1086 0.4355 MASEWSWEQNTLINELIQGMELARKLKEDLRLPYSVDSKDMLLQRILSSYEKALLILRCNASTSELQATSQATAALLPESPISVHGSPLSEDLDGVIKDHQEIQHDSKKRKITPKWMDHVRVSCESGLEGPQEDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWATKQVQRSDEDPTIFDITYRGKHTCSQGNNAVLPPKSPDKQEKTHRHNVDIHHAQASQESLTKFRNILSVNTDKLDNGDMAYPFTFPSTSFGCMKQYSHSLIPGTLENEYFLSDQYQTHLLSPTTPESNYLPSPTFQMNEFDGILNKPYSDSDINEIISTNTSATNSPIPDFNFSLDPVEIDPNFPFNNPGFFS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3400 361 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 357 - -
Vra7g3400 361 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g3400 361 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra7g3400 361 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra7g3400 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 357 IPR044810 GO:0003700
Vra7g3400 361 Pfam WRKY DNA -binding domain 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g3400 361 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3400 Vra-Chr7 53352679 53354797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3400 6 256 WRKY Transcription Factor Family AT4G23810 45.620 1.05e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra7g3400 WRKY 8.4e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3400 - - gmx:100815760 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0231 11 1555970 1557541 Vra7g3400 7 53352679 53354797 PCT