Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3387 ATGGCTACCTCACCCATGCTATGTGCTTTCTGTCTCCTCCTTTTCCATCTCCAAACCTCAAGAGGGAATACCAACCAACATCCTAACTGTAACACCCTCAGATGCGGCCATGTAGACATTCTCTTTCCTTTCGGTCTCAAACAATCCAACCAAGATCCTCGCTGCAGCTATTTCCCAGTTCCAAGCTTCCAACTTTCTTGCATCAATCGCACACAACCAGTTATAGACGTCCCAGGTTTCGGGAACCTCCTTGTGAAAAACATCGACTACGACTCCCAAAGCATCCGAGTCAACGACCCCAATGGGTGCCTTCCAAAACGCTTCTTACACGGCTGGAACCTTTCCGGTTCACCTTTTATTTTGAACCCCAGGATTTATGGATCGTCTCCCTTTAACCTCACTTTCATGCGTTGCCCCTCAAACTCGTCTCAGTTCCCGTTAATGCCAATTTCGTGCCTAAGCGACAACCGAAACTACTCGGTGATAGCTTCGTGGTCGCAACCTATTGTGTCGTCAACGGTGATGCCGGAACGGTGCCAAGTAATGTCTCACGCTCTTGTTCCTCTCCCTGTGTTGGACATGCCCATGTGGCCCTTCTGGTCCGATCTCAACACAGACCTCGAATTGGTCTGGACCGAACCCAGGTGCAGCGATTGTGCACTCAGTGGTCAAGTTTGTGGGTTCTCTGATAAAAAAAATCAAAGTCTTCGAGTTGGGTGCTTCCCTAGGGACTCCGGCAAAGGTCTTTCCAGGAGTGCAAAGTATGGGTTAGCCATTGGAGTGGGAATACCGGGTCTTTTATGCTTCATCGGAATGTCTTGTTTTGTCTGCGGTAAGTTTAGGACGCTGAGCCACCGTCGACGTGGCACGCATCTTCCGATCACCATTTCCCTGCAACCCGCTCCTTTTGCGGCGGGTCTTGACGGTGCGACGATTGAAAAGTATCCGAAAACTCTGATCGGAGAGAGTGGTCGGTTATTGAAGCCGAGCGACAACACCTGCGCAATTTGCCTCTCGGAATATGAACCCAAAGAGACGCTAAGGAGCATTCCCGAATGTGACCACTATTTTCACGCAGATTGCATCGACGAGTGGCTCAAGTTGAACGGCACCTGCCCCCTCTGCCGGAACTCACCGGAAACATCAACGGCTTCCTTTTCTTCTTCCTCTCCCACTTCCTCCTCATTCTCTTCTCCACAGTAG 1203 0.5046 MATSPMLCAFCLLLFHLQTSRGNTNQHPNCNTLRCGHVDILFPFGLKQSNQDPRCSYFPVPSFQLSCINRTQPVIDVPGFGNLLVKNIDYDSQSIRVNDPNGCLPKRFLHGWNLSGSPFILNPRIYGSSPFNLTFMRCPSNSSQFPLMPISCLSDNRNYSVIASWSQPIVSSTVMPERCQVMSHALVPLPVLDMPMWPFWSDLNTDLELVWTEPRCSDCALSGQVCGFSDKKNQSLRVGCFPRDSGKGLSRSAKYGLAIGVGIPGLLCFIGMSCFVCGKFRTLSHRRRGTHLPITISLQPAPFAAGLDGATIEKYPKTLIGESGRLLKPSDNTCAICLSEYEPKETLRSIPECDHYFHADCIDEWLKLNGTCPLCRNSPETSTASFSSSSPTSSSFSSPQ* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3387 400 ProSiteProfiles Zinc finger RING-type profile. 334 376 IPR001841 -
Vra7g3387 400 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 398 - -
Vra7g3387 400 SMART ring_2 334 375 IPR001841 -
Vra7g3387 400 MobiDBLite consensus disorder prediction 381 400 - -
Vra7g3387 400 CDD RING-H2_PA-TM-RING 333 376 - -
Vra7g3387 400 Pfam Ring finger domain 332 376 IPR001841 -
Vra7g3387 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 381 IPR013083 -
Vra7g3387 400 SUPERFAMILY RING/U-box 327 380 - -
Vra7g3387 400 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 398 - -
Vra7g3387 400 Pfam Wall-associated receptor kinase galacturonan-binding 30 99 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3387 Vra-Chr7 53248978 53251650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3387 27 379 C3H Transcription Factor Family AT2G46495 36.813 4.78e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3387 - - gmx:100810240 586.26