Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3381 ATGGAGGCGGATTTCGTGACCAATGATATGCTCGCACTCACACACGATGCTTTTGATGCCAACGATAATGATGATGTAGCTATTGAAGGGGAAAGATGTGGAATATGTATGGATGTGGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCGTTGGAAACAGCAAAGTTGAGGATGATTCACTCCTTAGAGATGATGATGATTGGTCCATTGAAGGGAAGAATAACACACTGCAATTTCCCTCATACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGACTGCAAGGTTCGTAATGGGTCGGCTACTGTTGAAGGAGATTCTGATCTTGATACCTCAATAGCATGTGATTCATGTGACATATGGTATCATGCATTCTGTGTGGGATTTGATACCGAAAGTACTTCAGAGAGTACATGGTTATGCCCCAGATGTGTAGCAGATGATGTTTCTAAGGGAGCAACTAATTCAATGGAGAGGACAACCATGGAATGTAATGCAGACAATAGTAACAGAGACTGTCATGGTGAGGATTCCTTTTCAGGAAAAGTGTCTGTCTCTGTTGCTGATACAGGAGAAACGGCTGTTGTTGTCTCGATGGTTGACAGAACAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTGTTGAAGTTGATGCGGATCCAATGACTGAATCATGTATTTTAATGTCTGACATAAATGATCAGCAAAGTGGTGAAATGAGGACAAATTCATTACCAATCATGGAAGAAGAACTGGAATTGTCTTTATCAAACAATAGTGATTTAAAGAAAAGTGCCAGTGGAGCAATGATTGAACCCAATGGCTTTGATGGAACCAAGTTACTTGATGAATCCCATACCAAAACTAGTCCATCCAGAATTGAATCTGATATGGGTCTTGATCTTGGTTTGTCAGTGGGCACTTATTTACCCGACAAGAGTGAACCAAAAGATCAAGCAACAGTTGTCCCATGCTTGACTTCAGAAAAATGTTTTTTGACAGGAGATGAAATTGAAGTCAATGCTTGTAAGGACAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTTCAGTAATGGGCAAGTTTATATAAAGGCTGAGGATGGAGATGCCAAACCTGAACTTCCTGATGAAGTTGTGCCAAAGAAAAGTAAAGCTACTGACAGCCAAATGAGTAACACTAATGACACAGCCAATGATCATCTCTTAGAAAATGCTCCGAAGCACCCTGCTTTAAAAGATTCTCCAACAAAGGCAACTGTTACACCAGATATAATGAATATAGTTAAAGGGACAGTCCGAAGGCTTTCCAAGGGACATACTAGTACTAATGCTTGTGACCAGTCATCTGAAAACAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAAATTCCGAGGATAGAGAATCATCCTTGTTAGTTCAAAATCTAAGGAAAGAAATTAGAGAAGCTGTCCGTAACAAGTCCTCTATAAACTTCGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGACTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAGAAGTCAATGTTGCAGAAAGGCAAAGTCCGTGAAAATTTAACAAAGAAAATTTTTGGTACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTCTGGAAATATCGTTGCATGAGAGCTACGAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATTTACTAAGAAAAGGTTCAGATGGTACAGAATCAAAGCAAGTTTCTGAATGTCAAACCAAGGATCCTATACTTTCTAGGTTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAAGAGGATGTAAAACCTCTCTCTGTGCTTAAAACTGTGGCTAACTCTGAGCAAACCAAACAAAACAACCCGTCAGAGAAAGTACCAAATCTATCCGTTGATAACAATACTATTAAAGCAACAGACGTAAACAATCTCTTATCAAAGATCAGTTTTGTTTCAAATGAAAAAAACGTAGACAAAAAGATTGTAAATGGACCAGTTGGCGATAATTCAACTTCTGGTAAATCAAGAATAAACAATTACTCAGAAAGGACGCCAGTCTCATCAGTTGGTTCCAAAACTGGCACCAAGGAGTTAGGCCAAAAATCTGGTTGCATGAAGAATGATAAAAGAAAATGGGCCTTGGAGGTCCTTGCGAGGAAAGCATCCACAACCAGCGGAGGAAACACAGCAAATGGAAATCAGGAAGACAACTCAGTTTTTAAAGGAAATTATCCTTTACTTGCCCAACTGCCAAGTGATATGAGACCAGTATTGGCACCTTCTCGACACAATAAAATTCCTATATCAGTTAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTGTTGAGGAACACAAATCTGACAGTGATTCGCAGAACTGGCATTACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAATAGCAAGCTTGTCTATTTGAACCTTTGTTCACAGGAGCTCTTGCATCGCACAAATAACACAAAATCTGATGTAGCCAGAGATACAACTCCAGCAGCCTCATCAGCAATGCTTAATGATCAACAATCAGAACCAAATATGGAAGATCTTTCAGCTGACCCTGCAGTTGAAACGGCCTTGAAAAATGCTGGTCTGCTGTCTGACTCCCCACCTAGCAGTCCACATGAGAACAGAGAAACATGTAATGGTGACATGTTGGGGTCCGATAATATACTTGAACTGGATTCGAATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAGGATTATATTGGTGCTAGTGTTACACAGGTTTCAAAACCAAAACAAGAGCAAAACGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATATCGCTTTGGATTGTGCTGACTGTGAGGGGCCTGAAAGAAATGAAGTGCCAGGAGAGGCATCCTGCTCGCCAAATTGTCACAACGATGCAGTTCAAATGGATAGGTCTTCTGTTTCTTCAGAGCTCCTACCCTTCGAGAGCGCTGTTGAGCCACTTGACAAAGAATTTGAAGAATTATTATACGGCCCTGACAAAGAACCACTAATAAAAAAATTTCCAGCTGGTGAATCAAGATCATTACATGGAGATGGCAAGACAGAAACTCTAAGCGTCGCCAATGACTACCATAATGATGAACAACATGCTTTGAATAATGCAGTAAAAGCTTCAGAACAGGGGAAGGAGAATCTCACAGAAAAAATTTCTGATACTACCATCACCGACCAGTCTTCCAATATATCTGAAACCGGTGAAAGTTTCCAACGGAAGGAAGGGAAATCTGATGTCACTGCTAAGCAGACTGACTCGGTAAATCATACAACTAAAAAGGTAGAAGCTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAGGTGGGCTGTTGCAAAAACAACTGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCGAGTTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCATCCCAACAGACCAAAAAAAATTGA 3816 0.4041 MEADFVTNDMLALTHDAFDANDNDDVAIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTVGNSKVEDDSLLRDDDDWSIEGKNNTLQFPSYYIDENAVICLDGDDCKVRNGSATVEGDSDLDTSIACDSCDIWYHAFCVGFDTESTSESTWLCPRCVADDVSKGATNSMERTTMECNADNSNRDCHGEDSFSGKVSVSVADTGETAVVVSMVDRTKWVPATSEKSLLPVEVDADPMTESCILMSDINDQQSGEMRTNSLPIMEEELELSLSNNSDLKKSASGAMIEPNGFDGTKLLDESHTKTSPSRIESDMGLDLGLSVGTYLPDKSEPKDQATVVPCLTSEKCFLTGDEIEVNACKDNARVAGGKRKHADFSNGQVYIKAEDGDAKPELPDEVVPKKSKATDSQMSNTNDTANDHLLENAPKHPALKDSPTKATVTPDIMNIVKGTVRRLSKGHTSTNACDQSSENKGNMAGLRVKKIMKRNSEDRESSLLVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRTAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDGTESKQVSECQTKDPILSRLYLADTSVFPRKEDVKPLSVLKTVANSEQTKQNNPSEKVPNLSVDNNTIKATDVNNLLSKISFVSNEKNVDKKIVNGPVGDNSTSGKSRINNYSERTPVSSVGSKTGTKELGQKSGCMKNDKRKWALEVLARKASTTSGGNTANGNQEDNSVFKGNYPLLAQLPSDMRPVLAPSRHNKIPISVRQTQLYRLTERLLRNTNLTVIRRTGITELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTNNTKSDVARDTTPAASSAMLNDQQSEPNMEDLSADPAVETALKNAGLLSDSPPSSPHENRETCNGDMLGSDNILELDSNPDLDIYGDFEYDLEDEDYIGASVTQVSKPKQEQNESKVKLVFSTMNLKKSDIALDCADCEGPERNEVPGEASCSPNCHNDAVQMDRSSVSSELLPFESAVEPLDKEFEELLYGPDKEPLIKKFPAGESRSLHGDGKTETLSVANDYHNDEQHALNNAVKASEQGKENLTEKISDTTITDQSSNISETGESFQRKEGKSDVTAKQTDSVNHTTKKVEAYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHCKAKNASFLIKEGEKVKKLAEQYAEASQQTKKN* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3381 1271 MobiDBLite consensus disorder prediction 739 774 - -
Vra7g3381 1271 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Vra7g3381 1271 Coils Coil 521 541 - -
Vra7g3381 1271 SUPERFAMILY RING/U-box 25 78 - -
Vra7g3381 1271 MobiDBLite consensus disorder prediction 910 938 - -
Vra7g3381 1271 MobiDBLite consensus disorder prediction 428 444 - -
Vra7g3381 1271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 96 IPR013083 -
Vra7g3381 1271 ProSiteProfiles Zinc finger PHD-type profile. 65 186 IPR019787 -
Vra7g3381 1271 MobiDBLite consensus disorder prediction 795 814 - -
Vra7g3381 1271 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Vra7g3381 1271 MobiDBLite consensus disorder prediction 735 777 - -
Vra7g3381 1271 SUPERFAMILY FYVE/PHD zinc finger 147 186 IPR011011 -
Vra7g3381 1271 MobiDBLite consensus disorder prediction 1156 1175 - -
Vra7g3381 1271 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Vra7g3381 1271 MobiDBLite consensus disorder prediction 953 979 - -
Vra7g3381 1271 MobiDBLite consensus disorder prediction 910 937 - -
Vra7g3381 1271 MobiDBLite consensus disorder prediction 954 968 - -
Vra7g3381 1271 MobiDBLite consensus disorder prediction 316 339 - -
Vra7g3381 1271 PANTHER RING FINGER PROTEIN 41, 151 104 1268 - -
Vra7g3381 1271 MobiDBLite consensus disorder prediction 411 461 - -
Vra7g3381 1271 SMART PHD_3 132 184 IPR001965 -
Vra7g3381 1271 MobiDBLite consensus disorder prediction 1146 1195 - -
Vra7g3381 1271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 189 IPR013083 -
Vra7g3381 1271 SMART ring_2 124 183 IPR001841 -
Vra7g3381 1271 SMART ring_2 33 71 IPR001841 -
Vra7g3381 1271 MobiDBLite consensus disorder prediction 411 427 - -
Vra7g3381 1271 Pfam PHD-finger 147 184 IPR019787 -
Vra7g3381 1271 Coils Coil 1247 1267 - -
Vra7g3381 1271 PANTHER RING/U-BOX PROTEIN 104 1268 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3381 33 120 C3H Transcription Factor Family AT3G58030 32.632 3.30e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra7g3381 PHD 2.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3381 - - gmx:100808102 2026.14