Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3370 ATGGATGTGCCACAAACTCCAACCCCCTCTCCACATTTGTATCCACAAGAACTTCAACTTAAACTTTACCAAGCCTTCATCTTCTCCATTCCCATACTCTTTTCCATCATTCTGGTTCTCTTGTTTTACTTGTTCTACCTCAAAAGAAGAGCTTCCTCTCTCTCATCACCACCTCTCCATATACTTACCAACACTGCCAATCCTCAAACAACATATCCTTACCCTTCACAACCTTACGGATTAGATCTTACAGTGCAATTTCTTGACAAACTTCCAAGAATTTTATTTGATGAGGATTTTGGAACAAGAGATTCAGTATGTTGTGTTTGCCTTGGAGAATTTGAGCTGAAGGAAGAGCTGCTACAAATTCCTTATTGCAAGCATGTGTTTCACATTAGCTGCATATGCAACTGGTTGCAATCAAACTCCACGTGTCCACTTTGTAGATGTTGCATCACACCCTCCACCAAATTCCTTAATACACCCTCACCTATTGTATCAGACTCACCACAGCAGGGTGGAATTTCAGGCTCTTCATCACACATCATGTCCATGCCTCAGCAACAAGAAGATCAAGTTGGTAATTCCACAAACACTACCATTTTCCAAGGAAATGGTGTATTACTTACATGA 633 0.4076 MDVPQTPTPSPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILTNTANPQTTYPYPSQPYGLDLTVQFLDKLPRILFDEDFGTRDSVCCVCLGEFELKEELLQIPYCKHVFHISCICNWLQSNSTCPLCRCCITPSTKFLNTPSPIVSDSPQQGGISGSSSHIMSMPQQQEDQVGNSTNTTIFQGNGVLLT* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3370 210 Pfam Ring finger domain 107 149 IPR001841 -
Vra7g3370 210 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Vra7g3370 210 SUPERFAMILY RING/U-box 84 160 - -
Vra7g3370 210 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 4 165 - -
Vra7g3370 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 4 165 - -
Vra7g3370 210 MobiDBLite consensus disorder prediction 162 197 - -
Vra7g3370 210 SMART ring_2 107 148 IPR001841 -
Vra7g3370 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3370 Vra-Chr7 53132770 53135051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3370 3 205 C3H Transcription Factor Family AT4G10150 33.495 6.61e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3370 K19039 - pvu:PHAVU_002G300500g 313.923