Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3351 ATGGGGATTTGCTTTAGCATTGAAGACAAGAGCAACCTCTCCGTCTCCGATTCCAACGCTAAGCCAAAGCCTCAAGGATCAGTAGGTCATGAATCTGCCGCTCCAATTGTTTCCATAAACATCAAAGATCTCCGCGAAGGTGTTGGATACAGCAATGTCGATAGTTTCACGTACGAGGAACTGAGGCTCGCTACGAAGCATTTTCGTCCCGATTTCATCTTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCGTCATAGACCACGGTGTGAGGTCGGGTTACAAGACCACTGAGGTCGCAATCAAGGAACTTAATCGCGAAGGATTTCAAGGAGACAGGGAATGGCTCACCGAAGTTAACTATTTAGGTCAATTCAGTCACCCTAATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGAACACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCCGCGAGGGGGCTGGCCTTTCTTCATGGTGCAGAAAGACCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGACGAGGATTTCAATGCGAAGCTTTCAGACTTTGGTCTTGCAAAGGATGGCCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCCGAGTATGTCATGACTGGTCATTTGACCGCTCGAAGTGATGTATATGGATTTGGGGTGGTACTACTTGAAATGCTTATTGGTAGAAGGGCATTGGACAAGAGCAGGCCTAGCCGAGAACACAACTTGGTCGAGTGGGCCCGCCCGCTTCTGAATCATAATAAGAAACTTCTGAAAATTTTAGACCCAAAATTAGAGGGACAATATTCAAGTAAAACTGCATTAAAGGTAGCCCATTTAGCATACCAATGTCTTAGCCAAAACCCGAAAGGAAGACCTCTAATGAGCCAGGTTGTTGAAATTCTCGATAACTTTCAGTCAAGGGAGGAAAATGAGGAAGATCAAATTCTTCAAACTGGTGGTAGCAGTAGTATAACCCTTTATGAGGTTCCCAAGGGCAGCAGCAATGACACTCCAACTTAA 1152 0.4505 MGICFSIEDKSNLSVSDSNAKPKPQGSVGHESAAPIVSINIKDLREGVGYSNVDSFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHGVRSGYKTTEVAIKELNREGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDEDFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYSSKTALKVAHLAYQCLSQNPKGRPLMSQVVEILDNFQSREENEEDQILQTGGSSSITLYEVPKGSSNDTPT* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3351 383 MobiDBLite consensus disorder prediction 359 383 - -
Vra7g3351 383 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Vra7g3351 383 MobiDBLite consensus disorder prediction 357 383 - -
Vra7g3351 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vra7g3351 383 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Vra7g3351 383 CDD STKc_IRAK 74 348 - -
Vra7g3351 383 Gene3D Transferase(Phosphotransferase) domain 1 151 368 - -
Vra7g3351 383 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 25 380 - -
Vra7g3351 383 PANTHER OS01G0588500 PROTEIN-RELATED 25 380 - -
Vra7g3351 383 ProSitePatterns Protein kinases ATP-binding region signature. 74 103 IPR017441 GO:0005524
Vra7g3351 383 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Vra7g3351 383 ProSiteProfiles Protein kinase domain profile. 68 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3351 Vra-Chr7 52927555 52932890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3351 55 381 Glycoside Hydrolase AT3G07070 48.485 1.11e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g3351 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3351 - - gmx:100800465 711.449