Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3348 ATGTCAAGGTTGGTTCAGGAGAAGAAGATAGGTGCAGGACGCGTGGTAGCAGTGGCAATTGAAAATAACAAAACAAGCCAATATGCAGCAAAATGGGCTGTTGATAATCTTCTTCCCAAAGATCAAGCGCTCTTACTGCTCCATGTTAGACAGAGAGCATCTTCCATTCCTACACCAACGGGAAATCTTGTACCTCTTGATGGCAACGACGATGTGGCTAGAGCATACATGCAACAGATGGACAACGAATCTAAAGAACTTTTCGCTTCGTTTCGGGTCTTCTGCAATAGAAAAAGTATACAATGCAAAGAGGTCTTACTGGATGACGTAGATATAAGCAAGGGATTAATAGAAGGTATTTCTAAATACGCCATCGAGCTTCTGGTACTTGGGGCACCTTCAAGGAGTGGTCTTGTAAGAAGATTTAGAACATCGGATGTTCCAAGTCTTGTGTCGAAAGGGGCACCACCATTCTGTACTGTGTACATAATTTCCAAAGGAAAAATCGCATCGGTGAAAACTGCTACTGCTAAACCTCCACCTCGTAACAATACACTGCAACCGCAGCAATCTCTTCAAACTCCTGGGAGAATGGATCCACACCTAACACGCAATCCTGCCCTAGCACGACCATCAATGGAGAAGGTACCCTACATTGTCCACCAACAACCAGCAGATGAAGACGACATAATATCACCCTTCACAAGACCTGGTAGAGGAGGAAGTTACAGATCGTACGAGTCCTCCATCGCTGACTCTGATATTTCATTCGTGAGCAGTGGAAGGCCTAGTGTTGATAGGATGTTCCCTTCAATGTATGATGAAATGGACTCTTGTATAAATCCCCGGCTTTCAACAGGCTCAGATTTTGATATGAGAAGCTATGGCTCTTCATTCTCAGGAGCCAAATCAATTGATCGTGGTGACTTCTCATTCAGTTCACAAGACAGTGGGACATCAATGTCATCGTCCATATTTTCAGCCTCAGATGAAGTGGAAGCTGAAATGAGGAGACTGAAGCTAGAACTGAAGCAGATGGAAATGTACAGTACTGCATGCAAAGAGGCTATGACAGCTAAGCAAAAGGCACTAGAACTTCAGCGTTGGAAAGTGGAAGAACAAAGGAAAATGGAAGAGGCACGATCAACTGAAGAAATAGCATTGTCAATGGATGAGAAGGAGAAAGCAAAATGTGTAGCTGCCATGGAAGCAGCAGAAACATCTCGAAAAATTGCAGAGTTGGAAGCACGAAAGAGAATGACTGTAGAATCTGGGCATAAGAAGAAGACTACAGATATGTTTTCACACTGTTCCGCCAGGTACAGAAAGTACACTATAGAGGAAATAGAAGAAGCAACGAATTTATTTTCGAACTCTCTCAAGGTCGGTGAAGGTGGTTACGGGCCAGTCTACAGATGTGAACTAGATCACACACCAGTTGCAGTGAAGATATTGAAACCAGATGCAGCTCAGGGACAAGCACAGTTTCAGCAGGAGATTGAAGTGCTAAGTAGCATAAGGCATCCAAATATGGTTCTTCTCCTTGGAGCATGCCCAGAGTTTGGCTGCTTGGTATACGAATATATGGCTAATGGAAGTTTGGATGATTGCCTCTTTCGGAGGGGCAACAAAAGAGCTCTTCCCTGGCAGCTGAGATTCCGAATTGCTGCAGAGATTGCAACTGGGCTCCTTTTCCTACACCAGACAAAGCCAGAACCACTTGTGCACCGTGACTTGAAACCTGGGAATATTTTGCTTGACCGTAACTTCGTGAGCAAGATCAGTGATGTGGGATTGGCCAGGCTTGTTCCGGCTTCAGTTGAAGACAGTGTCACACAGTATCGAATGACATCAACTGCGGGAACTTTCTGTTACATTGACCCTGAGTATCAGCAAACGGGCATGCTGGGAACCAAATCTGACATTTATTCATTGGGGATCATGCTTTTACAGATAATAACAGCAAAGCCACCAATGGGTCTGACTCACCATGTTGAAAGAGCTATTGAGAAGGGAACTTTTGCGGAGATGCTTGACCCAGCCGTTGAGGACTGGCCAATTGAACATGCCTTGCGTTTTGCCCAGCTTGCCTTGGCGTGTGCAGAAATGAAAAGAAAAGATAGACCTGATCTTGCAAAGGTTGTATTGCCCGAGCTCAATAAACTCAGAGACTTTGCTGAAGATAACATGCCCATGATGATGATGTTCGGTGCTCCCACAAGGAGCAACTACAACTACTCAAACTACCCCATTTCCTCAGCTCAAAACTCCATGAGTGACGGGTCAACGTCAGGAATGTCCGGATATGAAACCCAGTCAAGCTCACATGATTAA 2334 0.4477 MSRLVQEKKIGAGRVVAVAIENNKTSQYAAKWAVDNLLPKDQALLLLHVRQRASSIPTPTGNLVPLDGNDDVARAYMQQMDNESKELFASFRVFCNRKSIQCKEVLLDDVDISKGLIEGISKYAIELLVLGAPSRSGLVRRFRTSDVPSLVSKGAPPFCTVYIISKGKIASVKTATAKPPPRNNTLQPQQSLQTPGRMDPHLTRNPALARPSMEKVPYIVHQQPADEDDIISPFTRPGRGGSYRSYESSIADSDISFVSSGRPSVDRMFPSMYDEMDSCINPRLSTGSDFDMRSYGSSFSGAKSIDRGDFSFSSQDSGTSMSSSIFSASDEVEAEMRRLKLELKQMEMYSTACKEAMTAKQKALELQRWKVEEQRKMEEARSTEEIALSMDEKEKAKCVAAMEAAETSRKIAELEARKRMTVESGHKKKTTDMFSHCSARYRKYTIEEIEEATNLFSNSLKVGEGGYGPVYRCELDHTPVAVKILKPDAAQGQAQFQQEIEVLSSIRHPNMVLLLGACPEFGCLVYEYMANGSLDDCLFRRGNKRALPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPASVEDSVTQYRMTSTAGTFCYIDPEYQQTGMLGTKSDIYSLGIMLLQIITAKPPMGLTHHVERAIEKGTFAEMLDPAVEDWPIEHALRFAQLALACAEMKRKDRPDLAKVVLPELNKLRDFAEDNMPMMMMFGAPTRSNYNYSNYPISSAQNSMSDGSTSGMSGYETQSSSHD* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3348 777 Gene3D Phosphorylase Kinase; domain 1 426 528 - -
Vra7g3348 777 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 1 775 - -
Vra7g3348 777 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 151 - -
Vra7g3348 777 Gene3D HUPs 14 164 IPR014729 -
Vra7g3348 777 Coils Coil 329 349 - -
Vra7g3348 777 MobiDBLite consensus disorder prediction 177 198 - -
Vra7g3348 777 Pfam Protein kinase domain 459 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3348 777 MobiDBLite consensus disorder prediction 755 777 - -
Vra7g3348 777 MobiDBLite consensus disorder prediction 174 208 - -
Vra7g3348 777 Gene3D Transferase(Phosphotransferase) domain 1 529 734 - -
Vra7g3348 777 MobiDBLite consensus disorder prediction 226 245 - -
Vra7g3348 777 SUPERFAMILY Protein kinase-like (PK-like) 435 715 IPR011009 -
Vra7g3348 777 CDD STK_N 15 167 - -
Vra7g3348 777 PANTHER OS02G0152300 PROTEIN 1 775 - -
Vra7g3348 777 Pfam Universal stress protein family 14 145 IPR006016 -
Vra7g3348 777 ProSiteProfiles Protein kinase domain profile. 456 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3348 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672|GO:0006468
Vra7g3348 777 SMART serkin_6 456 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3348 Vra-Chr7 52908418 52912552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3348 16 743 Receptor kinase-like Gene Family AT5G35380 56.522 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra7g3348 Pkinase 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3348 - - gmx:100803837 1282.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3348 7 52908418 52912552 Vra7g3348 7 52908418 52912552 ECH
Vra7g3348 7 52908418 52912552 Vra1g0404 1 5271746 5276681 PCT