Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3344 ATGGAAGACCATGATACGCGGAGGGATAATGGTGGAAATGGAGTGATAGTGCCACCCTGCACTTGCTCGGGCGAAGAATTTCGCGCGCCTGGCGGTGGAAAAGGATCATTGCGAGTTGTTGCGGCTGCTATAAACGGTTCTTCTGTTTCAAATTATGACATGGCTGTGTCGCGGAACGTCAAGAAAACACAAAAGCGTAAAGGTCTTCAGGAGCTGTTCACAGACGATTACATTGTGAACAGAGTGTTGCGGAAGGATGGTCCTTCGCTTGGTCAGGAGTTTGACTTTCTTCCTTCTGGACCCAGACACACTTTTGCTTGTCAAGAGGACCAAGGATCCTCAAAAAAGAGGAAGGGTTCCAAGAGTGCAATTCGAAGGCTCACCGATTGTAATAGGACAGCACCTGTGAAGAAGCATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCTGGAGACCTTCCAATTAATTTTGGCGTTGATGGCCAAGAAGTTCCTTTACTTTCAGTAAACAACAGATCACGGAAAACAGTAAACAGGAATGGGGAACTATGTGTGACTCAGAATCAGTCTCCAAACAAAAGCTGTGGACTAGCTCTTGATAATGCAATATCTGAGGAGGGAGTTGATCGAGTTTCAATGTTAATTGATGATGAAGAGCTAGAGCTGAGGGAGTTACAAGAAGAAACTGATCTGTTTAGGTGTTCTAATCATCTTGCTGCTAGTGGAATGCTTGTCTGCTCACTTTGTAAAGATGCGCTAGTGAAGTTTCCACCAGATACTGTCAAGATGAAGAAACCTATCCATTTGCAACCTTGGGACTCCTCTCCTGAAATTGTGAAGAAATTATTTAAGATGTGTTTCTACGCTCATCCACTAAAGTTTCTCTTCTATAAAATGCACCTTTACTACTCAAATAGTGCTAAACATTGCCGTGCTAGAAAAATGTCAAATTCAATCAAGATTGCCTTAAAAGTTTTCCATTTCATTTATACATATGCCATAATTGTTGATATTTGTCCCTTCACTCTTGACGAGCTTGTTCAAGCTTTTCATGACAAGGACTCAATGTTACTTGGCAAGATTCATGTAGCCCTTCTCACACTTCTTCTATCTGACATTGAAGTGGAGCTAACTAATGGATTTTCACCTCATTTAAATAAATCATGTAACTTTCTTGCATTGCTTCACTCGGTTGAAAGTCAGGAATATTCCCTGGACTTCTGGAGAAGATCTCTAAATTCTCTTACTTGGATTGAAATACTTCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCGAAACAAGGGTCCTTACGTAGAGATGTCCTTAACAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGAGTGAGTTGTTTAATATTTTGTCAGAGAGAGGAAACACTGGATGCAAAGTGGTTGAGCTGGCAAAGTCAATGCAGATTGTTGAATTAAACCTTGCCAGCACTACAGAGGAACTTGAGTCTTTAATATGTTCTGCTCTGTCAAGTGATATTACTTTATTTGAAAAGATTTCAGCGACTGCTTACCGATTGCGAATGAGCACAGTTATGAAGGACAGTGATGAATCTCATTCAGATACGGAGTACTCTGGTAGTGTTGATGATGAACTTAATGACACTGATACATGCAGCAGTGCTGATGATTTTGAAAATGATTCAATAAATTCCAGTATAAGAAAATTGAAGAGTGTAAACAGTCATAAAAAGAATATGCGGAAAATATACACTGAAATTGATGAGAGCCGTTCCGGAGAAGCATGGTTATTAGGACTGATGGAGAGTGAATATTCAAACTTAAACATTGAAGAAAAATTGAATGCATTGGCAGCTTTAACTGATCTTGTTTCATCTGGATCCAGCGTTAGGATGAAGGATTTGTCTAAAGTCTCAGCTGATTGCAATTCTAGCATCCAATTACGAGGGTCTGGAGCTAAAATAAAGAGATCAGTAGTAAAGAAACCTGGGTCCCTTTTGAACCATAAAGTACACTTGAACTCTGATCCCTGTAGTGTAGACTCCTCATCATTATTCTCAAGATTCCACAACTATGAAGCTTACTTCCAAAAGGGAAACGGTTCATCTATGTCACATCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGGCCATGTAATGTAGATGATCCTGGTCACAGGAGGATATATTTTGAATCTTCTGAAGATGGTCACTGGGAGGTTATTGATACTGTGGAGGCATTATGTGCGTTGATGTCAATTCTGGACGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCATTGGAAAGGAGACAAACATCACTATGCAGATCTATGGCCAGGACTAATGTTAATAGTACTGGAATGGGTTCTATGTCACATTCTGATCAGTCTGAACTGGATATGGTCACAGATGACAGTTATTCTCCTGCATCTGATGTAGACAACCTGAACATGACCGAGACAGCTGAAGATTCCTTTCCTTCAGATGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGTAGAGGATCTAATTAAGAAATGGATCCGGGTTCAAGAATACGATTCTTGGATTTGGAATTCTTTTTACTCAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTACATGGACTCTCTTGCCAAATGCAAGAGTTGTCACGATCTTTACTGGCGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGACCTAGAAGAAAAATATGCTATCCACATAGCCACATGCAGGGAGAAAGAAGACAACAACACATTTCCTAATCACAAAGTGCTGCCATCACATATTCAATCTCTGAAAGCTGCAGTTTATGCTATTGAGTCTGTTATGCCTGAGGATGCCCTGGTTGGTGCTTGGAGGAAATCTGCTCATAAACTATGGGTGAAACGACTCAGACGCACCTCAACTTTACTAGAGCTTTTACAGGTTCTTGATGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTCAATGCAAATTTCCGGATGATGTGTTTGAAGAAATCATTGCATCATTTGCATCTATGCCCCGTACATCATCCGCCCTTGGTCTGTGGTTAGTGAAGCTAGATGTCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCTGAAAAAGCAGGGAACCGGTCAATATGGTCCTTGGCGATAG 3243 0.4089 MEDHDTRRDNGGNGVIVPPCTCSGEEFRAPGGGKGSLRVVAAAINGSSVSNYDMAVSRNVKKTQKRKGLQELFTDDYIVNRVLRKDGPSLGQEFDFLPSGPRHTFACQEDQGSSKKRKGSKSAIRRLTDCNRTAPVKKHGIGKGLMTVWRATNPDAGDLPINFGVDGQEVPLLSVNNRSRKTVNRNGELCVTQNQSPNKSCGLALDNAISEEGVDRVSMLIDDEELELRELQEETDLFRCSNHLAASGMLVCSLCKDALVKFPPDTVKMKKPIHLQPWDSSPEIVKKLFKMCFYAHPLKFLFYKMHLYYSNSAKHCRARKMSNSIKIALKVFHFIYTYAIIVDICPFTLDELVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRRDVLNKELNLLVNYGLCPGTLKSELFNILSERGNTGCKVVELAKSMQIVELNLASTTEELESLICSALSSDITLFEKISATAYRLRMSTVMKDSDESHSDTEYSGSVDDELNDTDTCSSADDFENDSINSSIRKLKSVNSHKKNMRKIYTEIDESRSGEAWLLGLMESEYSNLNIEEKLNALAALTDLVSSGSSVRMKDLSKVSADCNSSIQLRGSGAKIKRSVVKKPGSLLNHKVHLNSDPCSVDSSSLFSRFHNYEAYFQKGNGSSMSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTVEALCALMSILDDRGKREALLIESLERRQTSLCRSMARTNVNSTGMGSMSHSDQSELDMVTDDSYSPASDVDNLNMTETAEDSFPSDGAVVIEAGKKVEDLIKKWIRVQEYDSWIWNSFYSDLNVVKYGRRSYMDSLAKCKSCHDLYWRDERHCKICHMTFELDFDLEEKYAIHIATCREKEDNNTFPNHKVLPSHIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLLELLQVLDDFVGAINKDWLFQCKFPDDVFEEIIASFASMPRTSSALGLWLVKLDVIIAPYLDRVHPLKKQGTGQYGPWR* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3344 1080 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 55 173 IPR044977 GO:0006357
Vra7g3344 1080 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 192 294 IPR044977 GO:0006357
Vra7g3344 1080 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 325 1069 IPR044977 GO:0006357
Vra7g3344 1080 SMART testlast3 322 381 IPR018501 -
Vra7g3344 1080 PANTHER OS07G0619600 PROTEIN 55 173 - -
Vra7g3344 1080 PANTHER OS07G0619600 PROTEIN 325 1069 - -
Vra7g3344 1080 PANTHER OS07G0619600 PROTEIN 192 294 - -
Vra7g3344 1080 ProSiteProfiles DDT domain profile. 322 381 IPR018501 -
Vra7g3344 1080 Pfam DDT domain 328 378 IPR018501 -
Vra7g3344 1080 Coils Coil 214 241 - -
Vra7g3344 1080 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 601 640 IPR028942 -
Vra7g3344 1080 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 718 791 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3344 Vra-Chr7 52869146 52879054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3344 203 1058 Homeobox Transcription Factor Family AT1G28420 25.363 1.18e-65 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vra7g3344 WSD 2.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3344 - - gmx:100792062 1704.11