Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3343 ATGGCTTTATCTCTACCTACTCATTCTTCTCGCTCCCTCCTCCCTCTTCCACCATCCACCAAACCCACTTTCCCCACCCTCCGCCGCCTCAACCACCGCCTTTCACTCGTCACTGCTTCCATTCCCCTGCTCCAAGTCAATGACCTTAGAGCCAAGATCGTCGAGTCCAACGTCCAGATTCTCCACGGCGTTAACCTCACCGTTAACCAAGGAGAGGTCCACGCCATCATGGGAAAAAATGGCTCTGGAAAAAGTACTTTCGCCAAGGTTCTAGTGGGGCACCCCGATTATGAAGTTACTGGAGGCAGTGTTGTATTCAAAGGGGAGAATTTGCTTGAAATGGAACCCGAAGAAAGGTCTCTTTCGGGTCTCTTCATGAGTTTCCAGTCCCCCGTTGAAATTCCTGGTGTTTCCAATGATGAGTTTCTTAGAATGGCCTACAATGCTCGAAGGAAAAAGCTTGGTCTACCTGAGCTTGGACCACTCGAGTGTATTGAATACCTGATGAAAAAGCTTAAGCTTGTTAATATGAAGACTGATTTTCTCAATAGGAATGTGAATGAAGGGTTTAGTGGCGGTGAACGCAAACGCAATGAAATCTTGCAGCTTGCAGTTTTGGGGGCGGATTTGGCTATTTTGGATGAGATTGACTCTGGGTTGGATGTTGATGCGCTTAAGGATGTTGCCAGTGCCGTTAATCAGATTCTTACCCCACAAAATTCTTTGATGATGATAACTCATTATAGACGGATTCTGGATCTTTTGAAACCTACACATGTCCATGTTATGGACAAAGGGAAAATTGCAAGATCAGGTGACATATCGATGGTAGAAACTATTGAGGCAGAGGGATATGAAACTGTCTCCACTTCAACATAA 879 0.4562 MALSLPTHSSRSLLPLPPSTKPTFPTLRRLNHRLSLVTASIPLLQVNDLRAKIVESNVQILHGVNLTVNQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLSGLFMSFQSPVEIPGVSNDEFLRMAYNARRKKLGLPELGPLECIEYLMKKLKLVNMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALKDVASAVNQILTPQNSLMMITHYRRILDLLKPTHVHVMDKGKIARSGDISMVETIEAEGYETVSTST* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3343 292 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524
Vra7g3343 292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 44 290 IPR003439 GO:0005524
Vra7g3343 292 SMART AAA_5 70 267 IPR003593 -
Vra7g3343 292 TIGRFAM sufC: FeS assembly ATPase SufC 44 287 IPR010230 GO:0005524
Vra7g3343 292 Gene3D - 43 291 IPR027417 -
Vra7g3343 292 CDD ABC_FeS_Assembly 44 285 IPR010230 GO:0005524
Vra7g3343 292 MobiDBLite consensus disorder prediction 1 22 - -
Vra7g3343 292 MobiDBLite consensus disorder prediction 1 17 - -
Vra7g3343 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 275 IPR027417 -
Vra7g3343 292 Pfam ABC transporter 61 215 IPR003439 GO:0005524
Vra7g3343 292 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 37 290 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3343 Vra-Chr7 52862163 52865072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3343 57 272 Calmodulin-binding Proteins AT2G36910 24.783 1.23e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3343 K09013 - gmx:100811883 462.225