Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3314 ATGAAACAGCTCTATCAGTATGTGTGTGTGTCTGTCAGTCAGACAAAGTCAAACTTTTCAAACCTTCCATTTTCTATAATATATACCACTCTCCATATTCAGTGTTGTCTTGTTCACTTTCAAATCTTTTCTGACTTGAGAGCCATGGGAAGAGCTCCATGTTGTGACAAAGCTAATGTCAAAAGGGGTCCTTGGTCTCCCGAAGAAGATGAAACCCTCAAAAACTATCTCAAGAAGCATGGCACTGGTGGCAATTGGATTACTCTCCCACAAAAAGCAGGCCTAAAGCGGTGTGGGAAGAGTTGTCGTCTGAGATGGTTGAACTATCTCAGACCTCATATCAAGCATGGAGGTTTCACCGATGAGGAAGACCAAGTTATCTTCAACCTTTATTCAACCATCGGAAGCAGGTGGTCTCTTATTGCGGCTCAGTTACCTGGGAGAACAGACAACGATGTGAAAAACCATTGGAACGCTAAGTTAAAGAAAAAGTTTTTGGTAACAAACACCAATGCCACTGTCGATACTGTTTGTCCACAGTTCACAACTTCCACTACTCCTCAGTCTCGAGCTGAAAACCGTGTCTTCGATCATGAGAACTCAGCCGAGCCTCGTGTTTTGGGTTTGGAGCGGACACACATTCCAGTTCCTTCACCATTGCCTTTAGGATCTAATGTCTCTGGTCTTGGCAGCAGTTGTAGTGTACCATTATCCAATGAAGTCTCAGTCGTTTCAAACTCAACATCCCTTGCGAAACAGGAAAACCAGACTCAATGGTTTGGCTATGATGACGATATTGAAGGTGAAAATGAAGCCCTTTTGCTTGATTTTGTGTACGAAGATCTCTTGCTTAGTAATGGGTTTGTTTCCAGCGAAATTGCCCCATCATTTGGCTAA 897 0.4314 MKQLYQYVCVSVSQTKSNFSNLPFSIIYTTLHIQCCLVHFQIFSDLRAMGRAPCCDKANVKRGPWSPEEDETLKNYLKKHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQVIFNLYSTIGSRWSLIAAQLPGRTDNDVKNHWNAKLKKKFLVTNTNATVDTVCPQFTTSTTPQSRAENRVFDHENSAEPRVLGLERTHIPVPSPLPLGSNVSGLGSSCSVPLSNEVSVVSNSTSLAKQENQTQWFGYDDDIEGENEALLLDFVYEDLLLSNGFVSSEIAPSFG* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3314 298 Pfam Myb-like DNA-binding domain 117 158 IPR001005 -
Vra7g3314 298 Pfam Myb-like DNA-binding domain 62 110 IPR001005 -
Vra7g3314 298 SMART sant 61 112 IPR001005 -
Vra7g3314 298 SMART sant 115 163 IPR001005 -
Vra7g3314 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 110 IPR017930 -
Vra7g3314 298 PANTHER OS09G0431300 PROTEIN 49 234 - -
Vra7g3314 298 ProSiteProfiles Myb-like domain profile. 57 110 IPR001005 -
Vra7g3314 298 PANTHER OS09G0431300 PROTEIN 49 234 - -
Vra7g3314 298 Gene3D - 118 180 - -
Vra7g3314 298 ProSiteProfiles Myb-like domain profile. 111 161 IPR001005 -
Vra7g3314 298 CDD SANT 64 110 IPR001005 -
Vra7g3314 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 165 IPR017930 -
Vra7g3314 298 Gene3D - 55 116 - -
Vra7g3314 298 SUPERFAMILY Homeodomain-like 59 157 IPR009057 -
Vra7g3314 298 CDD SANT 119 158 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3314 Vra-Chr7 52633214 52634877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3314 49 166 MYB Transcription Factor Family AT5G57620 80.508 2.60e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g3314 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3314 K09422 - gmx:778160 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3314 7 52633214 52634877 Vra7g3314 7 52633214 52634877 ECH