Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3313 ATGATGTTGGGGGAGACGCACCGCGCAAACCCAACCGTACACATCCCACCGTGGCCGCTCATCCATGAATCCTCGCCGGAGATCTTTTCACCGTACACCGCCAATGCTGATTACTCTCCGTACTCTCTGCAAGAAGCTCTGACCGCCCTTCAGCACTACGACTCCACTGATGCAGAGTCAGACTCTGATGTTCCTTCCCTGGAATCGGATGTCCCGGTTGACGCCTACTCCTGTGATCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCACGTGGCAGGTCACATGACTGGACCGAGTGTCCGTACGCCCACCCCGGCGAGAAGGCTCGCCGCCGTGATCCTCGCAAGTATCACTACTCCGGGTCGGCCTGCCCCGATTTTCGCAAGGGAAATTGCAAGAAAGGTGACGCATGCGAGTATGCGCACGGGGTTTTCGAGTGCTGGCTCCACCCCGCTCGTTACCGCACTCAACCGTGCAAGGACGGCACCAGTTGCCGCCGGCGCGTCTGTTTCTTTGCCCATACGCCCGAGCAACTAAGGGTGTTGCCGCAGCAGAGTCCACGCAGTGCTGACTCGTACGACGGGTCTCCTCTAAGACACGCGATCGAGTCCTCCAAGACGGCGGCGCCCTTCGTGTCTTCTCCCGGGTCGTTGTCGCCGCCGGTGGAGTCTCCGCCCATGTCTCCGATGACTCGTTCGGGGTCTTTGTCTGTTAACGAGATGGTAGCTTCGCTGAGAAACTTGCAACTGGGGAAGATTAAGTCGTTGCCTGCATCCTGGAATGTTATAGGGTCTCCCGGGTTCGGGTCACCCAGAGGACCCGTGATCCGACCCGGGTTCTTCAGTCTTCCTTCGACCCCAACACAGGCTCCAGTTCGCGGCGGGGTGAATTACTTTGACATGTGGGATCAGAGTTGCGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCCGGAAGAAACATTAGAGCGAGGATGTTCGAGAAGTTGAGCAAAGAGAACGTTCTTGACGGGCCGGGTTCGGGTGATCCCGTCGTCCCGGATGTAGGGTGGGTCTCGGAGCTTGTGAGTCGCTGA 1080 0.5843 MMLGETHRANPTVHIPPWPLIHESSPEIFSPYTANADYSPYSLQEALTALQHYDSTDAESDSDVPSLESDVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAIESSKTAAPFVSSPGSLSPPVESPPMSPMTRSGSLSVNEMVASLRNLQLGKIKSLPASWNVIGSPGFGSPRGPVIRPGFFSLPSTPTQAPVRGGVNYFDMWDQSCEEEPVMERVESGRNIRARMFEKLSKENVLDGPGSGDPVVPDVGWVSELVSR* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3313 359 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Vra7g3313 359 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Vra7g3313 359 Gene3D - 121 184 - -
Vra7g3313 359 PANTHER UNKEMPT FAMILY MEMBER 7 357 IPR045234 -
Vra7g3313 359 MobiDBLite consensus disorder prediction 207 236 - -
Vra7g3313 359 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Vra7g3313 359 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 357 - -
Vra7g3313 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 145 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3313 Vra-Chr7 52628180 52629956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3313 70 184 C2H2 Transcription Factor Family AT5G12850 70.435 1.99e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra7g3313 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3313 - - gmx:100808676 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3313 7 52628180 52629956 Vra7g3313 7 52628180 52629956 ECH