Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3310 ATGACCGGAAGTTCTTCTTCTTCAAATGAAATTCCTGAATTTCCACCAAATTTTAATATCCTTGCCATTGATACTGACCACAAAGTTCTTGAATTCATCGAGAAATCATGCAACGAGAATTCTCATAAAGCTACGAAATGTTCTGAATCTTCAAGTGCAGTCGATCTTTTGCTGAAAAAAGAAATAGACTTTCATTTGATTATCATGGAACTCCATATGCCAAAGATGGATGGCTTTGGATTTCTGCGTTTTCTCAATAAAGAAGTAATTGATGTTCCTTTCATAATGATGTCTGAGGATAACAGTGACCTATCCCAACAGAAGGCTTTAACACTTGGAGCTTGCAATTATTGGGTTAAACCCTTCTTACAGTATACGTATTTGTTCGAGAGGAAGCGTTTGTGTTCACCTATGATGCGACATCATGTCCACTTCAGGCGCATAAGGAAAAATATTGATAGCTTGGAAGATGATGAAATAAGTGAGACAAGTTATAGTTCTGATGGAGAAGCCGAAGCCAACGATGATAGTCCCCATAAGAAAGAATAG 549 0.3734 MTGSSSSSNEIPEFPPNFNILAIDTDHKVLEFIEKSCNENSHKATKCSESSSAVDLLLKKEIDFHLIIMELHMPKMDGFGFLRFLNKEVIDVPFIMMSEDNSDLSQQKALTLGACNYWVKPFLQYTYLFERKRLCSPMMRHHVHFRRIRKNIDSLEDDEISETSYSSDGEAEANDDSPHKKE* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3310 182 MobiDBLite consensus disorder prediction 157 182 - -
Vra7g3310 182 Pfam Response regulator receiver domain 20 122 IPR001789 GO:0000160
Vra7g3310 182 Gene3D - 17 137 - -
Vra7g3310 182 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 181 IPR045279 GO:0009736
Vra7g3310 182 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
Vra7g3310 182 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 13 181 - -
Vra7g3310 182 SMART REC_2 18 129 IPR001789 GO:0000160
Vra7g3310 182 SUPERFAMILY CheY-like 16 128 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3310 Vra-Chr7 52595385 52597559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3310 2 177 Response Regulator Gene Family AT4G16110 29.545 1.08e-20 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra7g3310 Response_reg 1.4e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3310 - - vra:106765414 226.483