Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3305 ATGAATAATATGAGCAAGTTGAGTTGTGTTAGGAGCTCTGATCTGATAGATGCAAAGCTGGAAGAGCATCAACTGTGTGGATCCAAACAGTGCCCCGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGCTAGGTCTTCCAGCGGGAGTGAAGTTTGACCCAACGGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTCGAAGCAAAGAACATCAAATCACACCCTCTCATAGATGAGTTCATTCCCACTATTGAAGGAGAAGACGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGGTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCTTACACAACAGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGGGAAACCCGATGGCACAAGACAGGTAAGACAAGACCAGTGATGGTCAATGGCAAACAAAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGCAAGAATAGAAAACCCGAAAAGACAAACTGGGTTATGCACCAGTACCATCTGGGCCAGCACGAGGAAGAAAAAGAAGGAGAGCTTGTGGTGTCCAAGATATTCTACCAGACACAACCGAGGCAGTGCAATTGGTCAGATAGAAGTGCCATAACTGGTGAAGCAAGTGGAGAACAACAACCCAACAATAACGGAAGAAGAGACAGCGGAAGTGGGAGTTGTTCTTCTAAGGAAGTTCTCACTCACAGAGATGAAATGTCTGCTATCGTTGGACTCCCTCAAATAACAACCTTCAACACTTCCTTGGACATTCAACAACTCAAATCCGACCATTTTAGCTTCATTCCATTCAGAAAAAGCTTCGATGAGGTTGGAATAGGAGAAGCTTCGACGGGAAGAGAAGTGCAAGCATCAAGGTCGTGTGAGGAAGTACATGAAGGGCATAATATTGTAGCACATCATCATCATCATCAACAACAACAGCAGCAAAATCAGCATGCGCACCAACAAATTGCAACCACAGCCTTCCATATCAGTAGGCCTTCGCATCCCATCTCCACCATCATCTCTCCTCCACCCCTTCACCACGCATCCATCATCCTAGACGACAACGCCTACCATGTCTCAACGATCATGCTTCAAAATGAAAACTTCCAGCACCAGCACCATCATAAACTAGGAGGAAGGTCTACGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAACTGATGTCAAAGAGGAGTCATCCATTACAAACCAACAAGAGGCTGAATGGTTGAAATACTCTTCTTACTGGACAGACCCTGGCAACCTGCAGGATCATCATGAGTAG 1350 0.4607 MNNMSKLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNIKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSAITGEASGEQQPNNNGRRDSGSGSCSSKEVLTHRDEMSAIVGLPQITTFNTSLDIQQLKSDHFSFIPFRKSFDEVGIGEASTGREVQASRSCEEVHEGHNIVAHHHHHQQQQQQNQHAHQQIATTAFHISRPSHPISTIISPPPLHHASIILDDNAYHVSTIMLQNENFQHQHHHKLGGRSTSGLEELIMGCTSTDVKEESSITNQQEAEWLKYSSYWTDPGNLQDHHE* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3305 449 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Vra7g3305 449 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Vra7g3305 449 MobiDBLite consensus disorder prediction 224 248 - -
Vra7g3305 449 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 429 IPR044799 GO:0003700
Vra7g3305 449 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Vra7g3305 449 MobiDBLite consensus disorder prediction 224 250 - -
Vra7g3305 449 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 429 - -
Vra7g3305 449 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3305 Vra-Chr7 52540710 52545577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3305 14 438 NAC Transcription Factor Family AT5G56620 55.134 8.98e-140 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra7g3305 NAM 3.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3305 - - gmx:100794811 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3305 7 52540710 52545577 Vra7g3305 7 52540710 52545577 ECH