Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3304 ATGAAGATCGAGGAATTGGACGACGCGGAGTGTAGTATAGACGAACAAGAGAAGTACGAGAAGCAGATGGTCAGCGTTGAAGTGAAGAGAGCGTTGGTGGGCGCAGGTGCTCGGATCCTGTTCTATCCCACACTCTTGTATAATGTGCTTCGTAACAAAATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGTTTTTGTTACTGGGCGCTGTTCCTTTCCCCAAAGACGTTCCTCTTTTGAAGAGCCTTGGTGTGGGTGGTGTGATTACTCTCAATGAGCCATATGAAACCTTGGTGCCGTCGTCGTTGTATCGGGCTCACGGGATTGATCATTTGGTAATTCCCACTAGAGATTATCTCTTTGCCCCCTCGATTGTTGATATCAACCAGGCTGTGCAGTTCATTCATCAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGGTTGAATACAAGCACATGACACCTGCTGCTGCCCTGGAATATGTGCGGTCTCGACGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGGCTGTTCAAAACTATAACAATCGCAGGCCGTGTCCTTTACCGTACTCCCCCTCTGGGGACGCAGTTCTTATAACCAAAGCGGATCTTGAAGGATATCATAGCACATGTGATGCTGATATGGAGCTGGCTATTGTCCCCAAACTTCCAAGGACTATGCCCATGATTGCAAGATTATCTTGCCTGTTTGCATCCTTGAAAGTATCCGGGAGCAGTGTACCAATGATCAGGCGGCTGCCAGTTTCCGAGTCACGTGCTTGCTAA 849 0.4794 MKIEELDDAECSIDEQEKYEKQMVSVEVKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPLLKSLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSIVDINQAVQFIHQNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQNYNNRRPCPLPYSPSGDAVLITKADLEGYHSTCDADMELAIVPKLPRTMPMIARLSCLFASLKVSGSSVPMIRRLPVSESRAC* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3304 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 54 202 IPR029021 -
Vra7g3304 282 CDD PTPMT1 60 204 IPR044596 GO:0004721
Vra7g3304 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Vra7g3304 282 PANTHER OS01G0739200 PROTEIN 1 282 - -
Vra7g3304 282 Pfam Dual specificity phosphatase, catalytic domain 100 203 IPR000340 GO:0008138|GO:0016311
Vra7g3304 282 PANTHER - 1 282 - -
Vra7g3304 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Vra7g3304 282 Gene3D Protein tyrosine phosphatase superfamily 60 205 IPR029021 -
Vra7g3304 282 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Vra7g3304 282 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3304 Vra-Chr7 52531393 52533686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3304 10 270 Protein tyrosine phosphatase (PTP) family AT2G35680 51.613 3.42e-100 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3304 - - gmx:100817410 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3304 7 52531393 52533686 Vra7g3304 7 52531393 52533686 ECH