Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3303 ATGGAGAACACCTGGATCCTCACTTTTCATCATCTTCTTCTTCTTCTTCTTCTCCTCCTGCTCCATTCAAATGCAGCAAAAGGGGCCATTAATGTGGGTGTCGGTGTTGGTGGAAGAGCTGGCATAGGTGTTGGCATTGGTATTGGCAATGGGGGTAGTGGTGGTAACACCGCAGGACCCTCTGGATCCTCAGCGTCAAACCTCAACAATGCTTTCACGGCCCTCCAAGCTTGGAAATCTGCCATAACTGATGACCCTTTGAAGATTTTGGACACTTGGGTTGGTCCCAATGTGTGTTCCTACAAAGGTATCTTCTGCTCGAATTCTCAGGACGATAATGGGATTGCCACAACAGCATCGACCGAATCTTCTGTTGTTGCTGGAATAGATCTCAACCATGCAAATCTCCAAGGGACTCTTGTCAAAGAACTCTCTTTGCTATCAGATATCACCCTTTTCCATCTCAACACCAACAGGCTTTCTGGCTCAGTTCCTGAGTCTTTCAGAGACCTCACTTCCCTACAAGAGTTGGACCTCAGCAACAACCAACTCTCGGGACCTTTTCCCACTGCCATTCTATCCATGCCAAGCCTCGTCTACTTGGACCTCAGATACAACAACTTCTCAGGGCAACTTCCCGATGAACTCTTCAACAAGAGACTCGATGCAATATTCCTCAACAACAACAATTTTGGGGGTGAAATTCCAGACAATCTGGGAAATTCACCTGCCTCGGTGATCAACTTGGCCAACAACAAGTTGAGCGGAAGCATCCCTTTTAGCTTTGGCTTCATGAGTTCAAGACTGAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCTCAGGGAGTAGGGATCTTCACCGAGATGCAAGTGTTGGATGTGAGTTTCAACTCTCTGATGGGCCATTTGCCTGACACAATGAGTTGCTTGCAGGATATAGAGGTTCTCAATTTGGCGAATAACAAGCTCTCAGGGGAATTATCTGATGTGGTCTGCTCCTTGAGAAGCCTATTGAATCTAACCGTTGCTCACAATTTCTTCTCTGGGCTGAGCCAGGAATGCTCAAGGCTATTCAATGTGGGGTTTGATTTCTCGGATAACTGTATACCTGGAAGGAATATGCAAAGACCACAACCAGAGTGTTCTGGGATCCCTGGAGGTAGTCTCAATTGTCTTAGAATCCCTGCTCCAAAGCCTCTTGTTTGTGCAACTCTGGCTGCAACTTTGTCCAACCACGCAAACTCACCTTCCTCTTCTCCCTGA 1275 0.4682 MENTWILTFHHLLLLLLLLLLHSNAAKGAINVGVGVGGRAGIGVGIGIGNGGSGGNTAGPSGSSASNLNNAFTALQAWKSAITDDPLKILDTWVGPNVCSYKGIFCSNSQDDNGIATTASTESSVVAGIDLNHANLQGTLVKELSLLSDITLFHLNTNRLSGSVPESFRDLTSLQELDLSNNQLSGPFPTAILSMPSLVYLDLRYNNFSGQLPDELFNKRLDAIFLNNNNFGGEIPDNLGNSPASVINLANNKLSGSIPFSFGFMSSRLKEILFLNNQLTGCIPQGVGIFTEMQVLDVSFNSLMGHLPDTMSCLQDIEVLNLANNKLSGELSDVVCSLRSLLNLTVAHNFFSGLSQECSRLFNVGFDFSDNCIPGRNMQRPQPECSGIPGGSLNCLRIPAPKPLVCATLAATLSNHANSPSSSP* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3303 424 SUPERFAMILY L domain-like 71 363 - -
Vra7g3303 424 PRINTS Leucine-rich repeat signature 174 187 - -
Vra7g3303 424 PRINTS Leucine-rich repeat signature 314 327 - -
Vra7g3303 424 PANTHER LRR/EXTENSIN 12 423 - -
Vra7g3303 424 SMART LRR_typ_2 338 361 IPR003591 -
Vra7g3303 424 SMART LRR_typ_2 195 219 IPR003591 -
Vra7g3303 424 SMART LRR_typ_2 290 314 IPR003591 -
Vra7g3303 424 SMART LRR_typ_2 147 170 IPR003591 -
Vra7g3303 424 SMART LRR_typ_2 171 194 IPR003591 -
Vra7g3303 424 Pfam Leucine rich repeat N-terminal domain 69 107 IPR013210 -
Vra7g3303 424 Gene3D Ribonuclease Inhibitor 69 241 IPR032675 -
Vra7g3303 424 Gene3D Ribonuclease Inhibitor 242 363 IPR032675 -
Vra7g3303 424 Pfam Leucine rich repeat 153 208 IPR001611 GO:0005515
Vra7g3303 424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 12 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3303 Vra-Chr7 52520843 52522724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3303 68 397 Leucine-rich Repeat extension Gene Families AT3G24480 48.214 8.90e-102 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3303 - - gmx:100786358 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3303 7 52520843 52522724 Vra7g3303 7 52520843 52522724 ECH