Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3295 ATGTCAATTTTTCATTCCGTTTTCTATGGTTTAGTTCTAGTTATCTTTCTTCTACAGAATCCCAGTTCAACACAATGCCATACCAAGGGAATCAGACCCAGGCCTGGGAATGGTTTATCTACCAACATGACCAGAGTTCAATTTTCAGAAGAACAGTTCATGAAATGGGTGCGATTTGTGGGTGGCCTCAAACATTCTGTCTTTAAGACAGCAAAGAATAAGCTTTTTCCTTCTCACACTCTGCATGTTTCTAAGAAGCCAGGCAAAGGAGGTTTTTCGTCAATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATGTAGTGAGAGTGGTAATTAAGGTCCATGCAGGGGTTTATACGGAGAAAGTTAACATCCCTCCTTTGAAATCCTTCATAACAATACAAGGAGCTGGAGCGGATAACACCATTGTTCAATGGGGTGACAGTGCTCAAAGCCAGCCATTAGGAACCTACGGTTCCGCAACTTTTGCAGTGAATTCACCTTTTTTCGTAGCCAAGAATATCACATTCAAAAACACTGCCCCGATTCCAGCACCAGGAGCAGTAGGAAAGCAAGCAGTGGCATTAAGAATTTCAGCAGACAATGCAATATTCCTAGGCTGCAAATTCTTGGGAGCACAGGACACACTCTATGATCATCTGGGTAGGCATTACTATAAGGATTGTTATATCGAAGGCTCTGTAGATTTCATCTTTGGAAACGCGCTCTCTCTCTTTGAGGGATGTCACGTGCATGCAATAGCACAAGTTACAGGGGCCCTAACAGCCCAAGGAAGGAGCAGCTTATTACAGGACACGGGATTCTCGTTCGTTCACTGTAAGGTCACGGGCTCAGGAGCACTTTACCTTGGAAGGGCTTGGGGTCCTTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGATCCTAACCGTGAAATGACTGTGTTCTATGGACAGTACAAATGCACAGGAGCAGGAGCAAGGTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAGCCATTTATTTCCCTTAGCTACATCGATGGCTCTGAATGGATCAATCTTTCTTTTTGA 1131 0.443 MSIFHSVFYGLVLVIFLLQNPSSTQCHTKGIRPRPGNGLSTNMTRVQFSEEQFMKWVRFVGGLKHSVFKTAKNKLFPSHTLHVSKKPGKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNIPPLKSFITIQGAGADNTIVQWGDSAQSQPLGTYGSATFAVNSPFFVAKNITFKNTAPIPAPGAVGKQAVALRISADNAIFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQVTGALTAQGRSSLLQDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGARYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSF* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3295 376 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Vra7g3295 376 PANTHER PECTINESTERASE 3 375 - -
Vra7g3295 376 Pfam Pectinesterase 86 368 IPR000070 GO:0030599|GO:0042545
Vra7g3295 376 Gene3D - 78 375 IPR012334 -
Vra7g3295 376 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 375 - -
Vra7g3295 376 SUPERFAMILY Pectin lyase-like 77 374 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3295 Vra-Chr7 52463890 52466830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3295 86 375 Carbohydrate Esterase AT1G05310 48.658 7.27e-99 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3295 K01051 - gmx:100802832 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3295 7 52463890 52466830 Vra7g3295 7 52463890 52466830 ECH