Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3285 ATGGAGGAGGACGACCTACTCCAACGACTCGACTTGGAGTTCGCGTCCACCACTTCTGACTCCGTCATTTCCTCCACACTCAGAACCGAGGATTTCCGGAACCTCAACAGCTCCGGCGACATTTCCTCCATCAGTAGTGGCTCTGGCGAGATTCCTCCTGCTGCGGTCACCGAGGCTGTACTCTCTCCGCCTCCGCTGCACCGCGCGGGACTCGGTGATTGCGAGACTCCGGCGGTAAGGGAGAAGTGCATCGGAAGGAGTAACAAGGGAGTGAGTTGGGGACACACTTCAGTGATTGGAAGAAGGAAAGAGATGGAGGACGCCGTGGCAGTTATTCCGGGATTCATGTCTCGCACGTGCGATCACTTCGGCGGTTGTACCGCTCCCGGCTCCAGATCCTCCGACAAGATCTCTCCCGTTCATTTCTTCGGCGTTTACGACGGCCATGGTGGCTCACAGGTGGCTAAGTTCTGTGCTAAGCGGATGCACGATGTTATAGCAGAGGAGTGGAACCGAGAAATGGCAGGTGAGGCTGAGTGGCAGAGAAGATGGGAAACCGTATTTGCTAACAGTTTTGAGAGGACTGACAATGAAATCCTATCAGACGAAGTTGCACCTGAAATGGTAGGATCCACTGCATCTGTGGTGGTTCTATCTGGTTGCCAAATTATTGCATCCAACTGCGGCGACTCAAGGGTAGTTCTTTGCCGCAGGACACAAACTATCCCCTTGTCAGTGGATCAAAAGCCGGATAGACAAGATGAACTCTTGAGAATTGAAGGAGAAGGAGGAAAAGTCATAAACTGGAATGGAGCTAGGGTGTTTGGTGTTCTTGCCATGTCCAGGGCCATAGGTGATCGGTATTTGAGACCATGGATTATTCCCGTGCCTGAGATAACTTTTACAGCTAGGACAGACGAGGATGAGTGCTTAATTTTGGCAAGCGACGGACTCTGGGATGTAATGAGCAATGAAGAGGTTGGAGAAGTGGCACGCCACATTCTTAGAAGACGCCGCAGATCCTTGTCAGTGGAGGAACCGTCTCCTGCACAAGCTGTTGCCGACAGCCTGACTGAAATTGCATATGGTAGAAATAGTAAAGATAACATTTCAATCATAGTTGTTGATCTGAAATCCAAGAGAAAACGTCAGCAAAGGCCTCCTTTAATTTCCTAA 1176 0.5068 MEEDDLLQRLDLEFASTTSDSVISSTLRTEDFRNLNSSGDISSISSGSGEIPPAAVTEAVLSPPPLHRAGLGDCETPAVREKCIGRSNKGVSWGHTSVIGRRKEMEDAVAVIPGFMSRTCDHFGGCTAPGSRSSDKISPVHFFGVYDGHGGSQVAKFCAKRMHDVIAEEWNREMAGEAEWQRRWETVFANSFERTDNEILSDEVAPEMVGSTASVVVLSGCQIIASNCGDSRVVLCRRTQTIPLSVDQKPDRQDELLRIEGEGGKVINWNGARVFGVLAMSRAIGDRYLRPWIIPVPEITFTARTDEDECLILASDGLWDVMSNEEVGEVARHILRRRRRSLSVEEPSPAQAVADSLTEIAYGRNSKDNISIIVVDLKSKRKRQQRPPLIS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3285 391 Gene3D - 82 387 IPR036457 -
Vra7g3285 391 ProSitePatterns PPM-type phosphatase domain signature. 142 150 IPR000222 GO:0043169
Vra7g3285 391 Pfam Protein phosphatase 2C 100 370 IPR001932 -
Vra7g3285 391 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 75 386 - -
Vra7g3285 391 SMART PP2C_4 82 375 IPR001932 -
Vra7g3285 391 SUPERFAMILY PP2C-like 79 378 IPR036457 -
Vra7g3285 391 CDD PP2Cc 94 377 IPR001932 -
Vra7g3285 391 ProSiteProfiles PPM-type phosphatase domain profile. 92 377 IPR001932 -
Vra7g3285 391 PANTHER ALPHABET, ISOFORM E-RELATED 75 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3285 Vra-Chr7 52381571 52391791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3285 93 387 PP2C-type Phosphatase Gene Family AT4G26080 51.603 2.42e-98 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3285 K14497 - gmx:100793293 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3285 7 52381571 52391791 Vra7g3285 7 52381571 52391791 ECH