Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3283 ATGGATGACAACAACGCTATTGATAGGATTTCAGAGAACATCGATGATATTACGGTGATGATGGTATCGCCGGTGACAATGGTGAACAATTTCATAGACTTGGGTGGTTTTGATCTGGACGAGGCTCTTGCGGTGGTGGAGGGAGAATCAGGGTGTGTATTGGCAACGTGCAAGAGCTACGTGTCGAAGTTGCCGACGGTGAACGAGGTGAGGAGGGACGAGGTTTGCTCCGTTTGCATGGAGGGGTTCAGCCGGCACAACAGGGAAGGGGAAAACAAGCGAATCCCCTGCGGCCACGTGTACCATTCAAGCTGCATCACCATCTGGTTGGAGCACTGCAACTCCTGCCCCCTTTGCCGCCGCCGTGTTTTATTCTAA 378 0.5238 MDDNNAIDRISENIDDITVMMVSPVTMVNNFIDLGGFDLDEALAVVEGESGCVLATCKSYVSKLPTVNEVRRDEVCSVCMEGFSRHNREGENKRIPCGHVYHSSCITIWLEHCNSCPLCRRRVLF* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3283 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 124 IPR013083 -
Vra7g3283 125 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 36 122 - -
Vra7g3283 125 SUPERFAMILY RING/U-box 68 123 - -
Vra7g3283 125 SMART ring_2 76 119 IPR001841 -
Vra7g3283 125 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 36 122 - -
Vra7g3283 125 ProSiteProfiles Zinc finger RING-type profile. 76 120 IPR001841 -
Vra7g3283 125 Pfam Ring finger domain 76 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3283 Vra-Chr7 52374206 52374671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3283 28 120 C3H Transcription Factor Family AT5G01980 39.796 1.48e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3283 - K22378 gmx:102669154 153.68