Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3282 ATGGGTCGTCGAAAGATTGAGATCACGGAAGTGAAGGACCCCAACACCAAGCAAGTGACATTTTCGAAGCGTCGAACAGGTTTGTTCAAAAAAGCAAACGAATTATCAATTTTGTGTGGAGCTGAAGTTGCTATTGTTGTGTTTTCTCCTGGGAACAAGCCTTACTCTTTTGGGCACCCAAGTGTTGATGTTGTTGCAGACAAGTTTCTGCAACAAGAAAGTGCATCAGATGTTGTTGTCAAACCTAATGTTGTCGAAGGAAATAGTTCAGCTAATGATGACAACATAGATGCGCTGAATCAACAGTTGTCTGGTGTTCAAACTCTCATAAGCGAGGAACATAAGAAGGCTGTTGAACTTGACTGGAGAAAGAAGCAACAAGATGTGACTAAACTTACCTACAGCAAACAATTGCAACGTTCATACCTAAGGGTTCAGCGTAAGGTGGAGGACTATCTTGATGCCATTGAAGTGTCAGAGTACATGCTGCTTCTTGCAAAAGAACCTGTAATTGGAATAACTGCAAAAAGAAGAAAGAATTGA 543 0.4107 MGRRKIEITEVKDPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVDVVADKFLQQESASDVVVKPNVVEGNSSANDDNIDALNQQLSGVQTLISEEHKKAVELDWRKKQQDVTKLTYSKQLQRSYLRVQRKVEDYLDAIEVSEYMLLLAKEPVIGITAKRRKN* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3282 180 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Vra7g3282 180 PANTHER MADS BOX PROTEIN 2 176 - -
Vra7g3282 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra7g3282 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra7g3282 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra7g3282 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Vra7g3282 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra7g3282 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra7g3282 180 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vra7g3282 180 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Vra7g3282 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3282 Vra-Chr7 52368599 52369141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3282 1 69 Type I MADS-box Gene Family AT3G66656 73.913 1.95e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra7g3282 SRF-TF 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3282 - - gmx:100790601 233.417