Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3281 ATGGGTCGTCGTAAGATTGAAATTGCAGAGGTGAAGGATCCCAACAACAAGCAGGTTACATTCTCCAAGCGCCGCTCAGGTTTGTTCAAAAAGGCATTCGAATTGTCTGTACTGTGCGGTGTAGAACTTGCTATTGTTATGTTCTCTCCTGGGAAAAGGCCTCACTCTTTTGGCCATCCAAGTGTTAATATTGTTGCAGACAAATTTCTTTGGAAGAAGCCAACGTCAAATGTTGTCAGAGCAAATTATGTACGAGAAAATGACGCACCTAATGAAGTTGATGTCATGGATAGGTTAAGTCAACAGTTATCTGGGGTTGAAGTTCACATAAACGAGGAACACGAGAAGGCTACGGAACTTGACAAGAGAGAGAAAGAACAAGAAGCTTCACAAGCCCAAAACAAAGAATTGCTAAATTCACCAGTGCTCCAGCGTATGGTGGAAGATTATGTTGATGCGATCGAGGTCTCAGAGTGTATGTTGCTTCTGGCAAAAGAACCTGTAGTTGGAATATCAAATCGAACAATTACCAAGAGAAGAAGAAGAAGGAATTGA 555 0.418 MGRRKIEIAEVKDPNNKQVTFSKRRSGLFKKAFELSVLCGVELAIVMFSPGKRPHSFGHPSVNIVADKFLWKKPTSNVVRANYVRENDAPNEVDVMDRLSQQLSGVEVHINEEHEKATELDKREKEQEASQAQNKELLNSPVLQRMVEDYVDAIEVSECMLLLAKEPVVGISNRTITKRRRRRN* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3281 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Vra7g3281 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra7g3281 184 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 173 - -
Vra7g3281 184 MobiDBLite consensus disorder prediction 116 131 - -
Vra7g3281 184 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Vra7g3281 184 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Vra7g3281 184 MobiDBLite consensus disorder prediction 116 136 - -
Vra7g3281 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra7g3281 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra7g3281 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra7g3281 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra7g3281 184 Coils Coil 115 140 - -
Vra7g3281 184 PANTHER MADS BOX PROTEIN 2 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3281 Vra-Chr7 52361950 52362625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3281 1 165 Type I MADS-box Gene Family AT2G34440 35.393 7.63e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra7g3281 SRF-TF 9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3281 - - gmx:100790601 199.134