Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3274 ATGCACACACACACTCCCCTCCCGAAAACTTATTTCTCATTACATTACATCACTCACCACTCAACACCCAATCAAACCTTCAACAACATACATAACACGCATTCTCACTCACTCAACCACGTAAGCAAGCAAATCGCAATGACTGAGCTACCTGGCTCAGAATCATCCTCCTCTGCTTCCACTCGCAAGCACTCGTCTCCACAGGCCCATTTCGCAGGACCGGATCACAAAAAGCCCAAGCAGGCCCGAGATACCAGCAGCAAGCACCCCGTTTACAGAGGAGTCCGAATGCGGGCCTGGGGGAAGTGGGTATCCGAAATCCGCGAGCCAAGGAAAAAGAACCGGATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCCCACGACGTTGCCGCGCTCGCCATCAAAGGCAACTCCGCCATTCTCAACTTCCCCGAGCTCGCCGGCTCCCTGCCGCGGCCCGACTCGAACTCGCCGCGGGATGTTCAGGTGGCGGCGGCAAAGGCCGCCGCCATGGAGGTGATGGATCCCCCGACGACTCCGTCGTGGACGCTGTCGCAGTCTTCTTCGTCATCCTCGTTGGCGGTGAGTTCGTCCTCGGGGGAGACGTCGACGGCGGATGAGCTGGGAGAGATAGTGGAGCTGCCGAGTCTGGGGACGAGTTTGGAAATACCGGAACGGAGTGAGGAGGTGGTGTTCGTGGAGCCGGTGGACGGGTGGCTGTATTCCGAGGCGTGGTGTGACGGCATTTATGGTGAGAGGGAGTGTGGGGGTTATTTTATTGGAGATGAGATTTCAATGCAGGAGTCAGAGAGCATGATTCTTTGTGGCTTTGAGGGTTCCTTGTGGCAGCATTAA 867 0.5744 MHTHTPLPKTYFSLHYITHHSTPNQTFNNIHNTHSHSLNHVSKQIAMTELPGSESSSSASTRKHSSPQAHFAGPDHKKPKQARDTSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGNSAILNFPELAGSLPRPDSNSPRDVQVAAAKAAAMEVMDPPTTPSWTLSQSSSSSSLAVSSSSGETSTADELGEIVELPSLGTSLEIPERSEEVVFVEPVDGWLYSEAWCDGIYGERECGGYFIGDEISMQESESMILCGFEGSLWQH* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3274 288 MobiDBLite consensus disorder prediction 49 89 - -
Vra7g3274 288 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Vra7g3274 288 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Vra7g3274 288 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Vra7g3274 288 MobiDBLite consensus disorder prediction 49 67 - -
Vra7g3274 288 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Vra7g3274 288 MobiDBLite consensus disorder prediction 69 89 - -
Vra7g3274 288 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 42 287 - -
Vra7g3274 288 CDD AP2 92 150 IPR001471 GO:0003700|GO:0006355
Vra7g3274 288 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
Vra7g3274 288 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Vra7g3274 288 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 287 - -
Vra7g3274 288 Gene3D AP2/ERF domain 91 149 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3274 Vra-Chr7 52304929 52306416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3274 75 254 AP2-EREBP Transcription Factor Family AT5G25810 59.116 2.22e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g3274 AP2 9.3e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3274 7 52304929 52306416 Vra7g3274 7 52304929 52306416 ECH
Vra7g3274 7 52304929 52306416 Vra1g0488 1 5869351 5870712 PCT