Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3269 ATGGTGAGAGTGGTTCCCATGGCTTCTTCGATTCGGCCCACTCTCTTCTCCCTTACCTTCTCTCCACCTTCCTCACTTCCTCTCTTCAATCCTTCTCCCCGTCTCTCCTTCTCTCTGTCTCGGTACCATAATTTTGGTCTGAAAGCTTCCAGATTGTTGAGACAAGATGGTTATCCCGTCAGAGTCATGGCATCAGGGGACGTGTCACAATCTGTAGCGGCTGCTTCACCAGAAAATGTGCTTGAGTGGGTCAAGCAGGACAAGAGAAGAATGCTTCACGTTGTGTATCGAGTTGGGGACTTGGACAGGACTATAAAGTTTTATACGGAGTGTCTAGGAATGAAGCTCCTCAGAAAGAGGGACATACCGGAGGAGAAATATACTAATGCCTTTCTGGGATATGGGCCTGAAGACTCGCACTTTGTTATTGAACTGACATACAATTATGGAGTTGACAAGTATGATATTGGAACTGGATTTGGCCATTTTGGTATTGCCGTTGATGATGTTGTAAAAGCAGTGGAGCTAATAAGAGCTAAGGGTGGTAAAATAACAAGAGAGCCTGGTCCTGTAAAGGGAGGCCGTTCAGTGATTGCATTTGTTGAAGACCCTGATGGTTACAAATTTGAACTTATAGAAAGAGGTCCAACTCCTGAACCCTTGTGCCAAGTAATGCTCCGAGTGGGTGATCTTAATCGTTCCATAGAATTTTATGAGAAGGCATTTGGTATGGAGCTGCTTCGTACTCGAGACAATCCAGAATACAAGTATACCATAGCAATGCTGGGTTATGGTCCAGAAGATAAAAGCACTGTTCTGGAGTTGACTTACAATTATGGAGTCACTGAATATGATAAAGGAAATGCTTATGCTCAGATTGCAGTAGGCACCGATGATGTGTACAAAACTGCAGAAGCAATTAAACTAGCTGGAGGGAAGGTTACTCGTGAACCTGGACCATTACCTGGTATCAACACCAAAATTACTGCATGCTTGGATCCTGATGGTTGGAAGTCGGTTTTTGTAGATAATGTTGATTTTCTAAAGGAGTTGGAATAG 1059 0.4372 MVRVVPMASSIRPTLFSLTFSPPSSLPLFNPSPRLSFSLSRYHNFGLKASRLLRQDGYPVRVMASGDVSQSVAAASPENVLEWVKQDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVVKAVELIRAKGGKITREPGPVKGGRSVIAFVEDPDGYKFELIERGPTPEPLCQVMLRVGDLNRSIEFYEKAFGMELLRTRDNPEYKYTIAMLGYGPEDKSTVLELTYNYGVTEYDKGNAYAQIAVGTDDVYKTAEAIKLAGGKVTREPGPLPGINTKITACLDPDGWKSVFVDNVDFLKELE* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3269 352 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 89 219 IPR029068 -
Vra7g3269 352 PANTHER LACTOYLGLUTATHIONE LYASE 38 352 - -
Vra7g3269 352 CDD GlxI_Ni 91 212 - -
Vra7g3269 352 ProSitePatterns Glyoxalase I signature 2. 157 169 IPR018146 GO:0004462|GO:0046872
Vra7g3269 352 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 90 214 IPR037523 -
Vra7g3269 352 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 220 344 IPR037523 -
Vra7g3269 352 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 221 342 IPR029068 -
Vra7g3269 352 Gene3D - 217 352 IPR029068 -
Vra7g3269 352 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 91 211 IPR004360 -
Vra7g3269 352 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 223 338 IPR004360 -
Vra7g3269 352 ProSitePatterns Glyoxalase I signature 1. 223 244 IPR018146 GO:0004462|GO:0046872
Vra7g3269 352 CDD GlxI_Ni 221 342 - -
Vra7g3269 352 Gene3D - 62 215 IPR029068 -
Vra7g3269 352 PANTHER LACTOYLGLUTATHIONE LYASE, CHLOROPLASTIC-RELATED 38 352 - -
Vra7g3269 352 TIGRFAM glyox_I: lactoylglutathione lyase 78 223 IPR004361 GO:0004462|GO:0046872
Vra7g3269 352 TIGRFAM glyox_I: lactoylglutathione lyase 221 344 IPR004361 GO:0004462|GO:0046872
Vra7g3269 352 ProSitePatterns Glyoxalase I signature 1. 93 114 IPR018146 GO:0004462|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3269 Vra-Chr7 52266884 52271850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3269 223 341 Calmodulin-binding Proteins AT1G08110 28.966 1.02e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3269 K01759 - gmx:100780463 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3269 7 52266884 52271850 Vra7g3269 7 52266884 52271850 ECH
Vra7g3269 7 52266884 52271850 Vra1g0493 1 5923006 5926743 PCT