Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3265 ATGGAACGCATCGTTGGCCGCAAGTACAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGCGAAATCTACCTCGCGACGCATGTTGACACCTTCGAGATCGTCGCCGTCAAGATCGAGAATAGAAAAACGAAGCATCCGCAACTTCTTTACGAGGCAAAGCTCTACAATATTCTTCAAGGAGGAAGTGGAATTCCGAACATAAAATGGTCTGGCATAGACGGGGAGGAAAATGTGCTTGTTCTTGACTTGCTTGGGCCGAGTCTTGAAGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGGATAGAATATGTGCATTCTAAAGGATTTCTGCATAGGGATATTAAACCCGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATACCGGGAATCGGGTACCAATCGCCACATCCCCTACAGGGAGAACAAAAACTTAACCGGCACAGCCCGATATGCAAGTTGTAATACTCATCTTGGGATTGAGCAAAGTCGGCGGGATGATTTGGAATCTCTAGGATATGTACTTTTGTATTACCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCTACGAAGAAACAAAAGTATGATAAAATATGTCAGAAGAAAGTTTCAACTCCTATTGAGGTACTTTGCAAAACTCATCCAGTAGAGTTTGCTTCGTACTTCCATTACTGCCACTCATTGACATTTGATCAGCGACCTGATTATGGATTCTTAAAGCGCCTATTTCGGGACCTATTTTCTCGAGAAGGCTATGAATTTGATTATGTTTTTGATTGGACCATTTTAAAGTACCAGCAATCTCAAAAGAGTGCAGTGCTCCCTCCACTATCTCCAGTTCCAGGAGCAAGTAACAGTCGAGCAATCCCAATGGATATTGACCATCATCAAGGGCATGTTATGGAGCGGAATAGAGCAGGCGATGCTGCTGGTTCTGGTGTTAAAATCCAGTTTAAATCACCAGGGGGTAAAAATGTGAGCTATGAGAATCCACTTGACAAAAATATTTATGGAGAAGCAAATATACCCGCTGCTTCATTCTCTCCTGCTAGTACTTCTATAAGGAACTCCTTGAAGCTATCTTTGTCTGCTGAAGCTTCTAACCCTGGACACGGGCAAGGCAGTAAAATTGGCCCTTCAAGTAGCTTGATGTCATCTCTGCAGCACATGTCTTCTTCTAAATGA 1275 0.4337 MERIVGRKYKLGRKIGSGSFGEIYLATHVDTFEIVAVKIENRKTKHPQLLYEAKLYNILQGGSGIPNIKWSGIDGEENVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRESGTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYYLRGSLPWQGLKAATKKQKYDKICQKKVSTPIEVLCKTHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFSREGYEFDYVFDWTILKYQQSQKSAVLPPLSPVPGASNSRAIPMDIDHHQGHVMERNRAGDAAGSGVKIQFKSPGGKNVSYENPLDKNIYGEANIPAASFSPASTSIRNSLKLSLSAEASNPGHGQGSKIGPSSSLMSSLQHMSSSK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3265 424 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vra7g3265 424 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 406 - -
Vra7g3265 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vra7g3265 424 MobiDBLite consensus disorder prediction 336 356 - -
Vra7g3265 424 PANTHER CASEIN KINASE-RELATED 1 406 - -
Vra7g3265 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vra7g3265 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3265 424 MobiDBLite consensus disorder prediction 394 424 - -
Vra7g3265 424 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3265 424 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Vra7g3265 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3265 Vra-Chr7 52188151 52192237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3265 5 215 EF-hand Containing Proteins AT4G23650 30.415 5.30e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vra7g3265 Pkinase 6.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3265 K08960 - gmx:100779936 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3265 7 52188151 52192237 Vra7g3265 7 52188151 52192237 ECH
Vra7g3265 7 52188151 52192237 Vra1g0494 1 5931724 5935602 PCT