Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3260 ATGTCTGGGCCATTGGAAGAGGTTCCTTCAATGAAAGGAGGGTGCGAAGAAGGGTTGAACCTGAGGGCCACTGAGCTAAGGCTTGGGTTGCCAGGGCGTGAGTCACCTGAGAGGGAGGGCGTGTTTAAGACTGTGGTGGTGTCTGGGGCCAAGAGGGGCTTCTCTGATGCCATTGATGGAGGTTCTGGAAACTGGAATGGTGGATCTGAAGTGGGTTTGGGAAAAGATGTTGTCTTGTTCTCTCCGAGGGGAACTGTTAGTGCTGCCAAGTCTCTCACCCTCACTGCAACAGACTGCACCAACCAGCCAACTGTTTTGAGTGCTTCTGTTCTCAAAGAAACTGTTCCACACTCTCCAAAACCTCTGCATGAGAAGAAACCTCAGATTTCTGCTCCAGCTGCCAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCTCAACCTCAGAAGAATGATGATGCTGAGGCAGAAGGCAAGTCTGAATGTCTTTATGTTAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTTAATAGTTTTGGCACTTACAAGGAACTCTCTTTGGCACTCGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTTATGGGGTTTCTTCTAGTCCAGAAAAATTAAGTGAAAGTAGATTGATGGACCTTCTTCATGGTTCAGAATATGTTCTTACATACGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCTTGGGAGATGTTCACTGAATCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGGGCGGTGGAAAAGTGCAAAAGTCGCAACTAA 873 0.4685 MSGPLEEVPSMKGGCEEGLNLRATELRLGLPGRESPEREGVFKTVVVSGAKRGFSDAIDGGSGNWNGGSEVGLGKDVVLFSPRGTVSAAKSLTLTATDCTNQPTVLSASVLKETVPHSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMAQPQKNDDAEAEGKSECLYVKVSMEGAPYLRKVDLNSFGTYKELSLALEKMFSCFTISQCGSYGVSSSPEKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAVEKCKSRN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3260 290 Pfam AUX/IAA family 24 281 IPR033389 -
Vra7g3260 290 Gene3D - 163 284 - -
Vra7g3260 290 SUPERFAMILY CAD & PB1 domains 166 271 - -
Vra7g3260 290 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 283 IPR003311 GO:0005634|GO:0006355
Vra7g3260 290 ProSiteProfiles PB1 domain profile. 169 272 IPR000270 GO:0005515
Vra7g3260 290 PANTHER AUXIN-INDUCED PROTEIN 8 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3260 Vra-Chr7 52157626 52159934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3260 172 280 B3 DNA Binding Superfamily AT4G23980 30.275 1.20e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra7g3260 AUX_IAA 3.5e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3260 K14484 - gmx:100778529 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3260 7 52157626 52159934 Vra7g3260 7 52157626 52159934 ECH